NobleBlocks

Centre de Recherche sur la Biodiversité et l'Environnement

facilityToulouse, Occitanie, France

Research output, citation impact, and the most-cited recent papers from Centre de Recherche sur la Biodiversité et l'Environnement (France). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
1.1K
Citations
7.9K
h-index
34
i10-index
185
Also known as
Center for Research on Biodiversity and EnvironmentCentre de Recherche sur la Biodiversité et l'EnvironnementUMR 5300UMR5300

Top-cited papers from Centre de Recherche sur la Biodiversité et l'Environnement

Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants
Wenjing She, Daniel Grimanelli, Kinga Rutowicz, Marek William James Whitehead +4 more
2013· Development192doi:10.1242/dev.095034

The life cycle of flowering plants is marked by several post-embryonic developmental transitions during which novel cell fates are established. Notably, the reproductive lineages are first formed during flower development. The differentiation of spore mother cells, which are destined for meiosis, marks the somatic-to-reproductive fate transition. Meiosis entails the formation of the haploid multicellular gametophytes, from which the gametes are derived, and during which epigenetic reprogramming takes place. Here we show that in the Arabidopsis female megaspore mother cell (MMC), cell fate transition is accompanied by large-scale chromatin reprogramming that is likely to establish an epigenetic and transcriptional status distinct from that of the surrounding somatic niche. Reprogramming is characterized by chromatin decondensation, reduction in heterochromatin, depletion of linker histones, changes in core histone variants and in histone modification landscapes. From the analysis of mutants in which the gametophyte fate is either expressed ectopically or compromised, we infer that chromatin reprogramming in the MMC is likely to contribute to establishing postmeiotic competence to the development of the pluripotent gametophyte. Thus, as in primordial germ cells of animals, the somatic-to-reproductive cell fate transition in plants entails large-scale epigenetic reprogramming.

Microclimate, an important part of ecology and biogeography
Julia Kemppinen, Jonas J. Lembrechts, Koenraad Van Meerbeek, Jofre Carnicer +4 more
2024· Global Ecology and Biogeography179doi:10.1111/geb.13834

Abstract Brief introduction: What are microclimates and why are they important? Microclimate science has developed into a global discipline. Microclimate science is increasingly used to understand and mitigate climate and biodiversity shifts. Here, we provide an overview of the current status of microclimate ecology and biogeography in terrestrial ecosystems, and where this field is heading next. Microclimate investigations in ecology and biogeography We highlight the latest research on interactions between microclimates and organisms, including how microclimates influence individuals, and through them populations, communities and entire ecosystems and their processes. We also briefly discuss recent research on how organisms shape microclimates from the tropics to the poles. Microclimate applications in ecosystem management Microclimates are also important in ecosystem management under climate change. We showcase new research in microclimate management with examples from biodiversity conservation, forestry and urban ecology. We discuss the importance of microrefugia in conservation and how to promote microclimate heterogeneity. Methods for microclimate science We showcase the recent advances in data acquisition, such as novel field sensors and remote sensing methods. We discuss microclimate modelling, mapping and data processing, including accessibility of modelling tools, advantages of mechanistic and statistical modelling and solutions for computational challenges that have pushed the state‐of‐the‐art of the field. What's next? We identify major knowledge gaps that need to be filled for further advancing microclimate investigations, applications and methods. These gaps include spatiotemporal scaling of microclimate data, mismatches between macroclimate and microclimate in predicting responses of organisms to climate change, and the need for more evidence on the outcomes of microclimate management.

Effectiveness of the Natura 2000 network to cover threatened species
Audrey Trochet, Dirk S. Schmeller
2013· Nature Conservation105doi:10.3897/natureconservation.4.3626

The world‘s biodiversity is currently in rapid decline - Europe being no exception - with as principal cause a human-mediated global change. The Natura 2000 network is an important conservation tool for European biodiversity; it is a network of natural and semi-natural sites within Europe with high heritage values due to the exceptional flora and fauna they contain. Here, we evaluated the coverage of 300 threatened species by the Natura 2000 network, and determined potential factors influencing the designation of sites and the structure of the network within a country (social, ecological and demographic national factors). Our analysis was based on a coverage ratio between the Natura 2000 sites and distribution maps of threatened European species. We showed that the distributions of a large proportion of threatened species of mammals, birds and reptiles considered in our study were highly covered (above 90%) by the current Natura 2000 network, demonstrating that the Natura 2000 network also covers species not listed in the annexes of the Nature Directives. However, our results confirm that a large proportion of threatened species (some of them listed on the European annexes), especially fishes, are currently poorly covered by the Natura 2000 network. The coverage of species likely seemed to be highly related to national demographic factors, i.e. the proportion of the national urban population. Our analysis also suggested that the designation of sites depends too strongly on governmental politics, economic and cultural criteria, and interactions between society and the environment. A more effective process might be necessary to ensure the Natura 2000 network reaches its potential as the most important and comprehensive network of protected areas intended to halt the loss of biodiversity in Europe in the near future.

Worldwide Soundscapes: A Synthesis of Passive Acoustic Monitoring Across Realms
Kevin Darras, Rodney A. Rountree, Steven L. Van Wilgenburg, Anna F. Cord +4 more
2025· Global Ecology and Biogeography60doi:10.1111/geb.70021

ABSTRACT Aim The urgency for remote, reliable and scalable biodiversity monitoring amidst mounting human pressures on ecosystems has sparked worldwide interest in Passive Acoustic Monitoring (PAM), which can track life underwater and on land. However, we lack a unified methodology to report this sampling effort and a comprehensive overview of PAM coverage to gauge its potential as a global research and monitoring tool. To address this gap, we created the Worldwide Soundscapes project, a collaborative network and growing database comprising metadata from 416 datasets across all realms (terrestrial, marine, freshwater and subterranean). Location Worldwide, 12,343 sites, all ecosystem types. Time Period 1991 to present. Major Taxa Studied All soniferous taxa. Methods We synthesise sampling coverage across spatial, temporal and ecological scales using metadata describing sampling locations, deployment schedules, focal taxa and audio recording parameters. We explore global trends in biological, anthropogenic and geophysical sounds based on 168 selected recordings from 12 ecosystems across all realms. Results Terrestrial sampling is spatially denser (46 sites per million square kilometre—Mkm 2 ) than aquatic sampling (0.3 and 1.8 sites/Mkm 2 in oceans and fresh water) with only two subterranean datasets. Although diel and lunar cycles are well sampled across realms, only marine datasets (55%) comprehensively sample all seasons. Across the 12 ecosystems selected for exploring global acoustic trends, biological sounds showed contrasting diel patterns across ecosystems, declined with distance from the Equator, and were negatively correlated with anthropogenic sounds. Main Conclusions PAM can inform macroecological studies as well as global conservation and phenology syntheses, but representation can be improved by expanding terrestrial taxonomic scope, sampling coverage in the high seas and subterranean ecosystems, and spatio‐temporal replication in freshwater habitats. Overall, this worldwide PAM network holds promise to support cross‐realm biodiversity research and monitoring efforts.

The global loss of avian functional and phylogenetic diversity from anthropogenic extinctions
Thomas J. Matthews, Kostas A. Triantis, Joseph P. Wayman, Thomas E. Martin +4 more
2024· Science58doi:10.1126/science.adk7898

Humans have been driving a global erosion of species richness for millennia, but the consequences of past extinctions for other dimensions of biodiversity-functional and phylogenetic diversity-are poorly understood. In this work, we show that, since the Late Pleistocene, the extinction of 610 bird species has caused a disproportionate loss of the global avian functional space along with ~3 billion years of unique evolutionary history. For island endemics, proportional losses have been even greater. Projected future extinctions of more than 1000 species over the next two centuries will incur further substantial reductions in functional and phylogenetic diversity. These results highlight the severe consequences of the ongoing biodiversity crisis and the urgent need to identify the ecological functions being lost through extinction.

Tropical forests in the Americas are changing too slowly to track climate change
Jesús Aguirre‐Gutiérrez, Sandra Dı́az, Sami W. Rifai, José Javier Corral‐Rivas +4 more
2025· Science53doi:10.1126/science.adl5414

Understanding the capacity of forests to adapt to climate change is of pivotal importance for conservation science, yet this is still widely unknown. This knowledge gap is particularly acute in high-biodiversity tropical forests. Here, we examined how tropical forests of the Americas have shifted community trait composition in recent decades as a response to changes in climate. Based on historical trait-climate relationships, we found that, overall, the studied functional traits show shifts of less than 8% of what would be expected given the observed changes in climate. However, the recruit assemblage shows shifts of 21% relative to climate change expectation. The most diverse forests on Earth are changing in functional trait composition but at a rate that is fundamentally insufficient to track climate change.

PnTgs1-like expression during reproductive development supports a role for RNA methyltransferases in the aposporous pathway
Lorena Siena, Juan Pablo A. Ortiz, Olivier Leblanc, Silvina C. Pessino
2014· BMC Plant Biology45doi:10.1186/s12870-014-0297-0

BACKGROUND: In flowering plants, apomixis (asexual reproduction via seeds) is widely believed to result from failure of key regulators of the sexual female reproductive pathway. In the past few years, both differential display and RNA-seq comparative approaches involving reproductive organs of sexual plants and their apomictic counterparts have yielded extensive lists of candidate genes. Nevertheless, only a limited number of these genes have been functionally characterized, with few clues consequently available for understanding the molecular control of apomixis. We have previously identified several cDNA fragments with high similarity to genes involved in RNA biology and with differential amplification between sexual and apomictic Paspalum notatum plants. Here, we report the characterization of one of these candidates, namely, N69 encoding a protein of the S-adenosyl-L-methionine-dependent methyltransferases superfamily. The purpose of this work was to extend the N69 cDNA sequence and to characterize its expression at different developmental stages in both sexual and apomictic individuals. RESULTS: Molecular characterization of the N69 cDNA revealed homology with genes encoding proteins similar to yeast and mammalian trimethylguanosine synthase/PRIP-interacting proteins. These proteins play a dual role as ERK2-controlled transcriptional coactivators and mediators of sn(o)RNA and telomerase RNA cap trimethylation, and participate in mammals and yeast development. The N69-extended sequence was consequently renamed PnTgs1-like. Expression of PnTgs1-like during reproductive development was significantly higher in floral organs of sexual genotypes compared with apomicts. This difference was not detected in vegetative tissues. In addition, expression levels in reproductive tissues of several genotypes were negatively correlated with facultative apomixis rates. Moreover, in situ hybridization observations revealed that PnTgs1-like expression is relatively higher in ovules of sexual plants throughout development, from premeiosis to maturity. Tissues where differential expression is detected include nucellar cells, the site of aposporous initials differentiation in apomictic genotypes. CONCLUSIONS: Our results indicate that PnTgs1-like (formerly N69) encodes a trimethylguanosine synthase-like protein whose function in mammals and yeast is critical for development, including reproduction. Our findings also suggest a pivotal role for this candidate gene in nucellar cell fate, as its diminished expression is correlated with initiation of the apomictic pathway in plants.

Refocusing the microbial rare biosphere concept through a functional lens
Elena Litchman, Sébastien Villéger, Lucie Zinger, Jean‐Christophe Auguet +4 more
2024· Trends in Ecology & Evolution42doi:10.1016/j.tree.2024.06.005

The influential concept of the rare biosphere in microbial ecology has underscored the importance of taxa occurring at low abundances yet potentially playing key roles in communities and ecosystems. Here, we refocus the concept of rare biosphere through a functional trait-based lens and provide a framework to characterize microbial functional rarity, a combination of numerical scarcity across space or time and trait distinctiveness. We demonstrate how this novel interpretation of the rare biosphere, rooted in microbial functions, can enhance our mechanistic understanding of microbial community structure. It also sheds light on functionally distinct microbes, directing conservation efforts towards taxa harboring rare yet ecologically crucial functions.

Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants
Célia Baroux, Daphné Autran
2015· The Plant Journal42doi:10.1111/tpj.12890

Sexual reproduction in flowering plants offers a number of remarkable aspects to developmental biologists. First, the spore mother cells - precursors of the plant reproductive lineage - are specified late in development, as opposed to precocious germline isolation during embryogenesis in most animals. Second, unlike in most animals where meiosis directly produces gametes, plant meiosis entails the differentiation of a multicellular, haploid gametophyte, within which gametic as well as non-gametic accessory cells are formed. These observations raise the question of the factors inducing and modus operandi of cell fate transitions that originate in floral tissues and gametophytes, respectively. Cell fate transitions in the reproductive lineage imply cellular reprogramming operating at the physiological, cytological and transcriptome level, but also at the chromatin level. A number of observations point to large-scale chromatin reorganization events associated with cellular differentiation of the female spore mother cells and of the female gametes. These include a reorganization of the heterochromatin compartment, the genome-wide alteration of the histone modification landscape, and the remodeling of nucleosome composition. The dynamic expression of DNA methyltransferases and actors of small RNA pathways also suggest additional, global epigenetic alterations that remain to be characterized. Are these events a cause or a consequence of cellular differentiation, and how do they contribute to cell fate transition? Does chromatin dynamics induce competence for immediate cellular functions (meiosis, fertilization), or does it also contribute long-term effects in cellular identity and developmental competence of the reproductive lineage? This review attempts to review these fascinating questions.

Bringing traits back into the equation: A roadmap to understand species redistribution
Lise Comte, Romain Bertrand, Sarah E. Diamond, Lesley T. Lancaster +4 more
2024· Global Change Biology39doi:10.1111/gcb.17271

Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift-trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.

Testing biodiversity hypotheses in New Caledonia using phylogenetics
Jérôme Murienne
2009· Journal of Biogeography37doi:10.1111/j.1365-2699.2009.02143.x

New Caledonia represents an extraordinary ‘laboratory’ for evolutionary biologists. It harbours a high level of species richness and endemism as well as numerous relict groups. Here, I briefly review the various hypotheses that have been proposed to explain New Caledonian biodiversity and discuss the use of the phylogenetic method to test these hypotheses. New Caledonia has long been depicted as a museum of biodiversity, where the ‘long isolation of the territory’ and its ‘climatic stability’ can explain the presence of supposedly old endemic relicts, as well as the high species richness and endemism. This classical view has been accepted by many biologists and journalists for decades, despite contradicting geological evidence that New Caledonia underwent complete submersion. For example, in the latest geological review on New Caledonia (written by a geologist working on-site), the conclusion of submersion is unambiguous: after the Cretaceous the Norfolk Ridge/New Caledonia Ridge was below sea level up to the Late Eocene (or possibly up to the Middle Eocene) [...] one may infer that the Gondwanian fauna and flora were introduced in New Caledonia during or after the Middle to Late Eocene. Other recent geological papers also refer to such submersion until c. 35 Ma (Schellart, 2007, figure 4 and Collot et al., 2008, figure 15). In addition, all of the regional boreholes (DSDP 206 – New Caledonian basin; DSDP 207 and 208 – Lord Howe Rise) indicate that the region east of the Norfolk Ridge was below sea level until the Late Palaeocene (Collot et al., 2008). In this context, the Late Cretaceous to Early Eocene, mostly non-marine, siliciclastic rocks of the Kenn Plateau highlighted by Ladiges & Cantrill (2007) are of no particular interest since this structure is located East of Lord Howe Rise. Interestingly, despite the dominance of the museum hypothesis in the literature, biologists have long acknowledged a general submergence of the territory after its break-up from the eastern margin of Gondwana. This has led to alternative hypotheses, the first of which is here called the mountain refugia hypothesis. Based solely on the presence of relict groups in the territory, it rejects the notion of a complete submersion of the island despite the lack of geological evidence: ‘In spite of geological arguments, these submersions can never have been complete, since floral distributions indicate that considerable surface must have remained above water and served as refuges’ (Morat et al., 1984, p. 84). In a similar paper, Morat et al. (1986) propose an alternative hypothesis, here called the island refugia hypothesis. This hypothesis states that close ephemeral islands may have existed and served as refugia for the old Gondwanan biota: ‘Land areas of varying size that may be supposed to have existed near New Caledonia even during periods of general submergence would provide refuges and stepping-stones for the vegetation’ (Morat et al., 1986, p. 645). This hypothesis has never been clearly attested by geological evidence, which would require the finding of organic debris in sediments of the same age as the submersion (B. Pelletier, personal communication). However, it is possible: If New Caledonia was not a refuge for the Gondwanian biodiversity, did other land – except Australia – exist in the region before the Middle–Late Eocene? [...] This provides the possibility for the building of an alignment of islands likely restricted in size east of the Norfolk–New Caledonia Ridge [...] Finally, the long-distance dispersal hypothesis suggests that the present New Caledonian biota reached the island from neighbouring regions (Pole, 1994). This hypothesis implies that for endemic relict groups, the source population went extinct in the territory of origination after the colonization of New Caledonia. In this context, phylogenetic methodology and molecular dating provide the necessary framework with which to study the origin of biodiversity in the region. It is worthwhile to remind ourselves of the difference between the origin and diversification of a group. The most recent common ancestor of a given group and its sister-group represents the origin, and the most recent common ancestor of all the representatives of a given group represents the diversification. If New Caledonian biodiversity follows the museum hypothesis (Fig. 1, A), we would expect both the origin and the diversification of groups to be old, dating back to the fragmentation of Gondwana around 80 Ma. If the diversification of groups is younger than their origin (Fig. 1, B), as for some invertebrates (e.g. Boyer et al., 2007), vertebrates (e.g. Bauer et al., 2006) and plants (e.g. Setoguchi et al., 1998), it is practically impossible to distinguish between the three alternative hypotheses (mountain refugia, island refugia and long-distance dispersal). Some authors have favoured one or other of the alternative hypotheses. Pole (1994) favoured a post-Eocene dispersal hypothesis; Jolivet & Verma (2008) favoured an explanation implying incomplete submersion; and Heads (2008) favoured an island refugia hypothesis. None of those authors based their argumentation on a phylogenetic methodology. Indeed, as shown in Fig. 1, B, the same phylogenetic pattern (old origin and recent diversification) can be explained by the three hypotheses. Favouring one hypothesis over another is an expression of personal opinion based on geological arguments. In the case of a demonstrated recent origin (more recent that 80 Ma), the only valid interpretation that remains is long-distance dispersal (Fig. 1, C). Alternative phylogenetic patterns over time and their possible interpretation. OG, outgroup; NC, New Caledonian. NC endemics are assumed to represent endemic monophyletic groups with their sister-group (OG) distributed outside New Caledonia. There is an increasing body of evidence showing that much of the New Caledonian diversifications do not date back to the fragmentation of Gondwana (e.g. Murienne et al., 2005). This new paradigm is in agreement with the geological history of the territory indicating an emergence around the Middle–Late Eocene. Even if phylogenetics were to prove to be useful to study the causes of diversification in New Caledonia, or to test if supposedly Gondwanan groups follow a museum model, alternative hypotheses (mountain refugia, island refugia, long-distance dispersal) about the presence of relict groups all explain the same phylogenetic pattern, and so the hypotheses cannot be separated on the evidence. In this context, the presence of numerous relict groups in New Caledonia remains puzzling. Editor: John Lambshead

Patterns and drivers of diatom diversity and abundance in the global ocean
Juan José Pierella Karlusich, Karen Cosnier, Lucie Zinger, Nicolas Henry +4 more
2025· Nature Communications36doi:10.1038/s41467-025-58027-7

Diatoms constitute one of the most diverse and ecologically important phytoplankton groups, yet their large-scale diversity patterns and drivers of abundance are unclear due to limited observations. Here, we utilize Tara Oceans molecular and morphological data, spanning pole to pole, to describe marine diatom diversity, abundance, and environmental adaptation and acclimation strategies. The dominance of diatoms among phytoplankton in terms of relative abundance and diversity is confirmed, and the most prevalent genera are Chaetoceros, Thalassiosira, Actinocyclus and Pseudo-nitzschia. We define 25 distinct diatom communities with varying environmental preferences illustrative of different life strategies. The Arctic Ocean stands out as a diatom hotspot with 6 of the diatom communities being exclusive to it. Light harvesting and photoprotection are among the cellular functions in which natural diatom populations invest the bulk of their transcriptional efforts. This comprehensive study sheds light on marine diatom distributions, offering insights to assess impacts of global change and oceanic anthropogenic impacts.

Integrative taxonomy clarifies the evolution of a cryptic primate clade
Tobias van Elst, Gabriele Maria Sgarlata, Dominik Schüßler, George P. Tiley +4 more
2024· Nature Ecology & Evolution35doi:10.1038/s41559-024-02547-w

Global biodiversity is under accelerating threats, and species are succumbing to extinction before being described. Madagascar's biota represents an extreme example of this scenario, with the added complication that much of its endemic biodiversity is cryptic. Here we illustrate best practices for clarifying cryptic diversification processes by presenting an integrative framework that leverages multiple lines of evidence and taxon-informed cut-offs for species delimitation, while placing special emphasis on identifying patterns of isolation by distance. We systematically apply this framework to an entire taxonomically controversial primate clade, the mouse lemurs (genus Microcebus, family Cheirogaleidae). We demonstrate that species diversity has been overestimated primarily due to the interpretation of geographic variation as speciation, potentially biasing inference of the underlying processes of evolutionary diversification. Following a revised classification, we find that crypsis within the genus is best explained by a model of morphological stasis imposed by stabilizing selection and a neutral process of niche diversification. Finally, by clarifying species limits and defining evolutionarily significant units, we provide new conservation priorities, bridging fundamental and applied objectives in a generalizable framework.

Global impoverishment of natural vegetation revealed by dark diversity
Meelis Pärtel, Riin Tamme, Carlos P. Carmona, Kersti Riibak +4 more
2025· Nature35doi:10.1038/s41586-025-08814-5

. In the sampled regions with a minimal human footprint index, an average of 35% of suitable plant species were present locally, compared with less than 20% in highly affected regions. Besides having the potential to uncover overlooked threats to biodiversity, dark diversity also provides guidance for nature conservation. Species in the dark diversity remain regionally present, and their local populations might be restored through measures that improve connectivity between natural vegetation fragments and reduce threats to population persistence.

The global spectrum of tree crown architecture
Tommaso Jucker, Fabian Jörg Fischer, Jérôme Chave, David A. Coomes +4 more
2025· Nature Communications33doi:10.1038/s41467-025-60262-x

Trees can differ enormously in their crown architectural traits, such as the scaling relationships between tree height, crown width and stem diameter. Yet despite the importance of crown architecture in shaping the structure and function of terrestrial ecosystems, we lack a complete picture of what drives this incredible diversity in crown shapes. Using data from 374,888 globally distributed trees, we explore how climate, disturbance, competition, functional traits, and evolutionary history constrain the height and crown width scaling relationships of 1914 tree species. We find that variation in height-diameter scaling relationships is primarily controlled by water availability and light competition. Conversely, crown width is predominantly shaped by exposure to wind and fire, while also covarying with functional traits related to mechanical stability and photosynthesis. Additionally, we identify several plant lineages with highly distinctive stem and crown forms, such as the exceedingly slender dipterocarps of Southeast Asia, or the extremely wide crowns of legume trees in African savannas. Our study charts the global spectrum of tree crown architecture and pinpoints the processes that shape the 3D structure of woody ecosystems.

Convergence and parallelism: is a new life ahead of old concepts?
Laure Desutter‐Grandcolas, Frédéric Legendre, Philippe Grandcolas, Tony Robillard +1 more
2005· Cladistics32doi:10.1111/j.1096-0031.2004.00047.x

In comparative biology, character observations initially separate similar and dissimilar characters. Only similar characters are considered for phylogeny reconstruction; their homology is attested in a two-step process, firstly a priori of phylogeny reconstruction by accurate similarity statements, and secondly a posteriori of phylogeny analysis by congruence with other characters. Any pattern of non-homology is then a homoplasy, commonly, but vaguely, associated with "convergence". In this logical scheme, there is no way to analyze characters which look similar, but cannot meet usual criteria for homology statements, i.e., false similarity detected a priori of phylogenetic analysis, even though such characters may represent evolutionarily significant patterns of character transformations. Because phylogenies are not only patterns of taxa relationships but also references for evolutionary studies, we propose to redefine the traditional concepts of parallelism and convergence to associate patterns of non-homology with explicit theoretical contexts: homoplasy is restricted to non-similarity detected a posteriori of phylogeny analysis and related to parallelism; non-similarity detected a priori of phylogenetic analysis and necessarily described by different characters would then correspond to a convergence event s. str. We propose to characterize these characters as heterologous (heterology). Heterology and homoplasy correspond to different non-similarity patterns and processes; they are also associated with different patterns of taxa relationships: homoplasy can occur only in non-sister group taxa; no such limit exists for heterology. The usefulness of these terms and concepts is illustrated with patterns of acoustic evolution in ensiferan insects.

Global patterns and determinants of multiple facets of plant diversity
Enrico Tordoni, Carlos P. Carmona, Aurèle Toussaint, Riin Tamme +1 more
2024· Global Ecology and Biogeography29doi:10.1111/geb.13823

Abstract Aim Combining different biodiversity dimensions can reveal new diversity patterns disclosing the relative roles of historical, environmental and anthropogenic factors in shaping global seed plant diversity. Location Global. Time period Present. Major taxa studied Vascular plants. Methods We collated a database encompassing taxonomic (249,000 species), functional and phylogenetic information (34,694 species) of seed plants across different regions of the world. Species richness in each region was weighted accounting for their phylogenetic and functional distinctiveness, obtaining a new metric—μ‐diversity—which was modelled to disentangle the relative roles of historical factors such as climate variability since the Last Glacial Maximum (LGM), environmental features (e.g. actual evapotranspiration—AET) and anthropogenic factors (past and current). Results Higher μ‐diversity was observed in Papuasia, South East Asia, Australia and Central America, whereas the lowest values were primarily located in the Northern Hemisphere. Climate variability and AET were the most important determinants of μ‐diversity and individual diversity facets, whereas the importance of past human impacts (i.e. the onset of pastoralism) equated or exceeded those of the present ones. Main conclusions Our integrative approach proved more sensitive in describing species diversity patterns. Few areas on Earth host high and unique proportions of multiple diversity facets and individual diversity facets contribute differently to μ‐diversity across continents. Historical climate stability and water‐energy dynamics strongly affect species diversity, but we also observed that past land‐use legacy may have influenced current plant diversity, which is under intense anthropogenic pressure, especially in Asia as well as in Central and South America.

Aquatic ecosystem indices, linking ecosystem health to human health risks
Fanny G. De Carvalho, Adeline Loyau, Michelle Kelly-Irving, Dirk S. Schmeller
2025· Biodiversity and Conservation27doi:10.1007/s10531-025-03010-3

Abstract The good functioning of aquatic ecosystems is essential for providing diverse ecosystem services that benefit humans. The degradation of ecosystem health due to continuous stressors, such as climate change or water pollution, is leading to an increase in human health risks and well-being. Indicators have been developed to determine human health risks from recreational and drinking water. Still, a general application to aquatic ecosystems linking ecosystem health and human health risks has not been done. We here reviewed indicators and indices applied to assess the health of aquatic ecosystems and their links with human health risk and well-being. We evaluated the extent to which indicators can witness a risk to human health and well-being. A total of 245 articles were reviewed, consisting of 185 on the assessment of aquatic ecosystem health and 60 linking ecosystem health and human health or well-being. Out of the 65 indices described, we evaluated the use of several parameters and their relevance to evaluate human health risks, including physico-chemical parameters, bioindicators, contaminants, and pathogens, therefore covering the various sources of ecosystem disturbance. Based on our assessment, we propose a set of indicators that would allow for the inclusion of risks for human health and well-being in the assessment of ecosystem health (e.g. coliforms, algae, pH, nutrients, chemical compounds, and ecosystem services). Measuring these parameters should be incorporated into future studies to allow an understanding of the linkage of ecosystem and human health.

Fishing ban halts seven decades of biodiversity decline in the Yangtze River
Fangyuan Xiong, Z. Li, Sébastien Brosse, Julian D. Olden +4 more
2026· Science27doi:10.1126/science.adu5160

China's rapid economic development has triggered an unparalleled freshwater biodiversity crisis since the 1950s. To restore fisheries resources, the Yangtze River Fishing Ban was implemented in 2021 to cease all basin-wide commercial fishing. We evaluate the effectiveness of this large-scale conservation action by assessing fish communities across mainstem habitats before and after the ban (2018 to 2023). The seven-decadal biodiversity loss was halted with improvements in fish biomass, body condition, species diversity, and initial recovery of threatened species. Eliminating fishing pressure was likely key to this recovery, in addition to actions targeting water quality improvement, hydrological and riparian habitat restoration, and vessel traffic reduction. Ambitious conservation actions can halt biodiversity loss in the Yangtze River, bringing hope for biodiversity recovery in other large rivers.

Design and performance of the Climate Change Initiative Biomass global retrieval algorithm
Maurizio Santoro, Oliver Cartus, S. Quegan, Heather Kay +4 more
2024· Science of Remote Sensing26doi:10.1016/j.srs.2024.100169

International audience