Colorado School of Mines

mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the alpha and beta diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 h with a laptop computer.

Hydrate research has expanded substantially over the past decade, resulting in more than 4,000 hydrate-related publications. Collating this vast amount of information into one source, Clathrate Hydrates of Natural Gases, Third Edition presents a thoroughly updated, authoritative, and comprehensive description of all major aspects of natural gas cla

The Review summarizes much of particle physics and cosmology. Using data from previous editions, plus 2,873 new measurements from 758 papers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as supersymmetric particles, heavy bosons, axions, dark photons, etc. Particle properties and search limits are listed in Summary Tables. We give numerous tables, figures, formulae, and reviews of topics such as Higgs Boson Physics, Supersymmetry, Grand Unified Theories, Neutrino Mixing, Dark Energy, Dark Matter, Cosmology, Particle Detectors, Colliders, Probability and Statistics. Among the 118 reviews are many that are new or heavily revised, including a new review on Neutrinos in Cosmology.Starting with this edition, the Review is divided into two volumes. Volume 1 includes the Summary Tables and all review articles. Volume 2 consists of the Particle Listings. Review articles that were previously part of the Listings are now included in volume 1.The complete Review (both volumes) is published online on the website of the Particle Data Group (http://pdg.lbl.gov) and in a journal. Volume 1 is available in print as the PDG Book. A Particle Physics Booklet with the Summary Tables and essential tables, figures, and equations from selected review articles is also available.The 2018 edition of the Review of Particle Physics should be cited as: M. Tanabashi et al. (Particle Data Group), Phys. Rev. D 98, 030001 (2018).

Abstract The Review summarizes much of particle physics and cosmology. Using data from previous editions, plus 2,143 new measurements from 709 papers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as supersymmetric particles, heavy bosons, axions, dark photons, etc. Particle properties and search limits are listed in Summary Tables. We give numerous tables, figures, formulae, and reviews of topics such as Higgs Boson Physics, Supersymmetry, Grand Unified Theories, Neutrino Mixing, Dark Energy, Dark Matter, Cosmology, Particle Detectors, Colliders, Probability and Statistics. Among the 120 reviews are many that are new or heavily revised, including a new review on Machine Learning, and one on Spectroscopy of Light Meson Resonances. The Review is divided into two volumes. Volume 1 includes the Summary Tables and 97 review articles. Volume 2 consists of the Particle Listings and contains also 23 reviews that address specific aspects of the data presented in the Listings. The complete Review (both volumes) is published online on the website of the Particle Data Group (pdg.lbl.gov) and in a journal. Volume 1 is available in print as the PDG Book. A Particle Physics Booklet with the Summary Tables and essential tables, figures, and equations from selected review articles is available in print, as a web version optimized for use on phones, and as an Android app.

This biennial Review summarizes much of particle physics. Using data from previous editions, plus 2658 new measurements from 644 papers, we list, evaluate, and average measured properties of gauge bosons, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as Higgs bosons, heavy neutrinos, and supersymmetric particles. All the particle properties and search limits are listed in Summary Tables. We also give numerous tables, figures, formulae, and reviews of topics such as the Standard Model, particle detectors, probability, and statistics. Among the 112 reviews are many that are new or heavily revised including those on Heavy-Quark and Soft-Collinear Effective Theory, Neutrino Cross Section Measurements, Monte Carlo Event Generators, Lattice QCD, Heavy Quarkonium Spectroscopy, Top Quark, Dark Matter, ${V}_{\mathit{cb}}$ ${V}_{\mathit{ub}}$, Quantum Chromodynamics, High-Energy Collider Parameters, Astrophysical Constants, Cosmological Parameters, and Dark Matter.A booklet is available containing the Summary Tables and abbreviated versions of some of the other sections of this full Review. All tables, listings, and reviews (and errata) are also available on the Particle Data Group website: http://pdg.lbl.gov/.The 2012 edition of Review of Particle Physics is published for the Particle Data Group as article 010001 in volume 86 of Physical Review D.This edition should be cited as: J. Beringer et al. (Particle Data Group), Phys. Rev. D 86, 010001 (2012).

Abstract The Review summarizes much of particle physics and cosmology. Using data from previous editions, plus 3,324 new measurements from 878 papers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as supersymmetric particles, heavy bosons, axions, dark photons, etc. Particle properties and search limits are listed in Summary Tables. We give numerous tables, figures, formulae, and reviews of topics such as Higgs Boson Physics, Supersymmetry, Grand Unified Theories, Neutrino Mixing, Dark Energy, Dark Matter, Cosmology, Particle Detectors, Colliders, Probability and Statistics. Among the 120 reviews are many that are new or heavily revised, including a new review on High Energy Soft QCD and Diffraction and one on the Determination of CKM Angles from B Hadrons. The Review is divided into two volumes. Volume 1 includes the Summary Tables and 98 review articles. Volume 2 consists of the Particle Listings and contains also 22 reviews that address specific aspects of the data presented in the Listings. The complete Review (both volumes) is published online on the website of the Particle Data Group (pdg.lbl.gov) and in a journal. Volume 1 is available in print as the PDG Book. A Particle Physics Booklet with the Summary Tables and essential tables, figures, and equations from selected review articles is available in print and as a web version optimized for use on phones as well as an Android app.

This paper explores the technical and economic characteristics of an accelerated energy transition to 2050, using new datasets for renewable energy. The analysis indicates that energy efficiency and renewable energy technologies are the core elements of that transition, and their synergies are likewise important. Favourable economics, ubiquitous resources, scalable technology, and significant socio-economic benefits underpin such a transition. Renewable energy can supply two-thirds of the total global energy demand, and contribute to the bulk of the greenhouse gas emissions reduction that is needed between now and 2050 for limiting average global surface temperature increase below 2 °C. Enabling policy and regulatory frameworks will need to be adjusted to mobilise the six-fold acceleration of renewables growth that is needed, with the highest growth estimated for wind and solar PV technologies, complemented by a high level of energy efficiency. Still, to ensure the eventual elimination of carbon dioxide emissions will require new technology and innovation, notably for the transport and manufacturing sectors, which remain largely ignored in the international debate. More attention is needed for emerging infrastructure issues such as charging infrastructure and other sector coupling implications. Keywords: Energy transition, Sustainable development, Energy policy

Abstract In the performance evaluation of a protocol for an ad hoc network, the protocol should be tested under realistic conditions including, but not limited to, a sensible transmission range, limited buffer space for the storage of messages, representative data traffic models and realistic movements of the mobile users (i.e. a mobility model). This paper is a survey of mobility models that are used in the simulations of ad hoc networks. We describe several mobility models that represent mobile nodes whose movements are independent of each other (i.e. entity mobility models) and several mobility models that represent mobile nodes whose movements are dependent on each other (i.e. group mobility models). The goal of this paper is to present a number of mobility models in order to offer researchers more informed choices when they are deciding on a mobility model to use in their performance evaluations. Lastly, we present simulation results that illustrate the importance of choosing a mobility model in the simulation of an ad hoc network protocol. Specifically, we illustrate how the performance results of an ad hoc network protocol drastically change as a result of changing the mobility model simulated. Copyright © 2002 John Wiley & Sons, Ltd.

Carbon capture and storage (CCS) is vital to climate change mitigation, and has application across the economy, in addition to facilitating atmospheric carbon dioxide removal resulting in emissions offsets and net negative emissions. This contribution reviews the state-of-the-art and identifies key challenges which must be overcome in order to pave the way for its large-scale deployment.

This book surveys the broad field of mechanical alloying from a scientific and technological perspective to form a timely and comprehensive resource valuable to both students and researchers. The treatment progresses from the historical background through a description of the process, the different metastable effects produced, and the mechanisms of

Microalgae represent an exceptionally diverse but highly specialized group of micro-organisms adapted to various ecological habitats. Many microalgae have the ability to produce substantial amounts (e.g. 20-50% dry cell weight) of triacylglycerols (TAG) as a storage lipid under photo-oxidative stress or other adverse environmental conditions. Fatty acids, the building blocks for TAGs and all other cellular lipids, are synthesized in the chloroplast using a single set of enzymes, of which acetyl CoA carboxylase (ACCase) is key in regulating fatty acid synthesis rates. However, the expression of genes involved in fatty acid synthesis is poorly understood in microalgae. Synthesis and sequestration of TAG into cytosolic lipid bodies appear to be a protective mechanism by which algal cells cope with stress conditions, but little is known about regulation of TAG formation at the molecular and cellular level. While the concept of using microalgae as an alternative and renewable source of lipid-rich biomass feedstock for biofuels has been explored over the past few decades, a scalable, commercially viable system has yet to emerge. Today, the production of algal oil is primarily confined to high-value specialty oils with nutritional value, rather than commodity oils for biofuel. This review provides a brief summary of the current knowledge on oleaginous algae and their fatty acid and TAG biosynthesis, algal model systems and genomic approaches to a better understanding of TAG production, and a historical perspective and path forward for microalgae-based biofuel research and commercialization.

The summarizes much of particle physics and cosmology. Using data from previous editions, plus 2,717 new measurements from 869 papers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as supersymmetric particles, heavy bosons, axions, dark photons, etc. Particle properties and search limits are listed in Summary Tables. We give numerous tables, figures, formulae, and reviews of topics such as Higgs Boson Physics, Supersymmetry, Grand Unified Theories, Neutrino Mixing, Dark Energy, Dark Matter, Cosmology, Particle Detectors, Colliders, Probability and Statistics. Most of the 120 reviews are updated, including many that are heavily revised. The is divided into two volumes. Volume 1 includes the Summary Tables and 97 review articles. Volume 2 consists of the Particle Listings and contains also 23 reviews that address specific aspects of the data presented in the Listings. The complete (both volumes) is published online on the website of the Particle Data Group () and in a journal. Volume 1 is available in print as the . A with the Summary Tables and essential tables, figures, and equations from selected review articles is available in print, as a web version optimized for use on phones, and as an Android app. The 2024 edition of the Review of Particle Physics should be cited as: S. Navas et al. (Particle Data Group), Phys. Rev. D 110, 030001 (2024) © 2024 2024

Maintaining a stable phase For solar cell applications, all-inorganic perovskite phases could be more stable than those containing organic cations. But the band gaps of the former, which determine the electrical conductivity of these materials, are not well matched to the solar spectrum. The cubic structure of CsPbI 3 is an exception, but it is stable in bulk only at high temperatures. Swarnkar et al. show that surfactant-coated α-CsPbI 3 quantum dots are stable at ambient conditions and have tunable band gaps in the visible range. Thin films of these materials can be made by spin coating with an antisolvent technique to minimize surfactant loss. When used in solar cells, these films have efficiencies exceeding 10%, making them promising for light harvesting or for LEDs. Science , this issue p. 92

Path to zero carbon emissions Models show that to avert dangerous levels of climate change, global carbon dioxide emissions must fall to zero later this century. Most of these emissions arise from energy use. Davis et al. review what it would take to achieve decarbonization of the energy system. Some parts of the energy system are particularly difficult to decarbonize, including aviation, long-distance transport, steel and cement production, and provision of a reliable electricity supply. Current technologies and pathways show promise, but integration of now-discrete energy sectors and industrial processes is vital to achieve minimal emissions. Science , this issue p. eaas9793

Abstract The first commercial United States natural gas production (1821) came from an organic-rich Devonian shale in the Appalachian basin. Understanding the geological and geochemical nature of organic shale formations and improving their gas producibility have subsequently been the challenge of millions of dollars worth of research since the 1970s. Shale-gas systems essentially are continuous-type biogenic (predominant), thermogenic, or combined biogenic-thermogenic gas accumulations characterized by widespread gas saturation, subtle trapping mechanisms, seals of variable lithology, and relatively short hydrocarbon migration distances. Shale gas may be stored as free gas in natural fractures and intergranular porosity, as gas sorbed onto kerogen and clay-particle surfaces, or as gas dissolved in kerogen and bitumen. Five United States shale formations that presently produce gas commercially exhibit an unexpectedly wide variation in the values of five key parameters: thermal maturity (expressed as vitrinite reflectance), sorbed-gas fraction, reservoir thickness, total organic carbon content, and volume of gas in place. The degree of natural fracture development in an otherwise low-matrix-permeability shale reservoir is a controlling factor in gas producibility. To date, unstimulated commercial production has been achievable in only a small proportion of shale wells, those that intercept natural fracture networks. In most other cases, a successful shale-gas well requires hydraulic stimulation. Together, the Devonian Antrim Shale of the Michigan basin and Devonian Ohio Shale of the Appalachian basin accounted for about 84% of the total 380 bcf of shale gas produced in 1999. However, annual gas production is steadily increasing from three other major organic shale formations that subsequently have been explored and developed: the Devonian New Albany Shale in the Illinois basin, the Mississippian Barnett Shale in the Fort Worth basin, and the Cretaceous Lewis Shale in the San Juan basin. In the basins for which estimates have been made, shale-gas resources are substantial, with in-place volumes of 497-783 tcf. The estimated technically recoverable resource (exclusive of the Lewis Shale) ranges from 31 to 76 tcf. In both cases, the Ohio Shale accounts for the largest share.

The majority of slope stability analyses performed in practice still use traditional limit equilibrium approaches involving methods of slices that have remained essentially unchanged for decades. This was not the outcome envisaged when Whitman & Bailey (1967) set criteria for the then emerging methods to become readily accessible to all engineers. The finite element method represents a powerful alternative approach for slope stability analysis which is accurate, versatile and requires fewer a priori assumptions, especially, regarding the failure mechanism. Slope failure in the finite element model occurs 'naturally' through the zones in which the shear strength of the soil is insufficient to resist the shear stresses. The paper describes several examples of finite element slope stability analysis with comparison against other solution methods, including the influence of a free surface on slope and dam stability. Graphical output is included to illustrate deformations and mechanisms of failure. It is argued that the finite element method of slope stability analysis is a more powerful alternative to traditional limit equilibrium methods and its widespread use should now be standard in geotechnical practice. En grande majorité, les analyses de stabilité de pente menées dans la pratique continuent à utiliser les méthodes traditionnelles d'équilibre limite et des systèmes de tranches qui n'ont pratiquement pas changé depuis des dizaines d'années. Ce n'était pas le résultat envisagé quand Whitman et Bailey (1967) ont établi des critères pour que ces méthodes alors émergeantes puissent devenir facilement accessibles à tous les ingénieurs. La méthode d'éléments finis qui représente une alternative puissante pour les analyses de stabilité de pente, est exacte, polyvalente et demande moins d'hypothèses ‘a priori’, surtout en ce qui concerne les mécanismes de rupture. La rupture de pente dans le modèle à éléments finis se produit ‘naturellement’ à travers des zones dans lesquelles la résistance au cisaillement du sol est insuffisante pour résister aux contraintes tangentielles. Cet exposé décrit plusieurs exemples d'analyses de stabilité de pente utilisant les éléments finis et établit des comparaisons avec d'autres méthodes, comme l'influence d'une surface libre sur la stabilité d'une pente et d'une digue. Nous joignons une représentation graphique pour illustrer les déformations et mécanismes de rupture. Nous avançons que la méthode d'éléments finis pour analyser la stabilité des pentes constitue une alternative plus puissante aux méthodes traditionnelles d'équilibre limite et que son utilisation devrait maintenant devenir une pratique standard en géotechnique.

A detailed perspective on the use of anion-exchange membranes in fuel cells, electrolysers, flow batteries, reverse electrodialysis, and bioelectrochemical systems.

More than 3000 per- and polyfluoroalkyl substances (PFASs) are, or have been, on the global market, yet most research and regulation continues to focus on a limited selection of rather well-known long-chain PFASs, particularly perfluorooctanesulfonate (PFOS), perfluorooctanoic acid (PFOA) and their precursors. Continuing to overlook the vast majority of other PFASs is a major concern for society. We provide recommendations for how to proceed with research and cooperation to tackle the vast number of PFASs on the market and in the environment.

In this paper, the iterative learning control (ILC) literature published between 1998 and 2004 is categorized and discussed, extending the earlier reviews presented by two of the authors. The papers includes a general introduction to ILC and a technical description of the methodology. The selected results are reviewed, and the ILC literature is categorized into subcategories within the broader division of application-focused and theory-focused results.

The most recent IPCC assessment has shown an important role for negative emissions technologies (NETs) in limiting global warming to 2 °C cost-effectively. However, a bottom-up, systematic, reproducible, and transparent literature assessment of the different options to remove CO2 from the atmosphere is currently missing. In part 1 of this three-part review on NETs, we assemble a comprehensive set of the relevant literature so far published, focusing on seven technologies: bioenergy with carbon capture and storage (BECCS), afforestation and reforestation, direct air carbon capture and storage (DACCS), enhanced weathering, ocean fertilisation, biochar, and soil carbon sequestration. In this part, part 2 of the review, we present estimates of costs, potentials, and side-effects for these technologies, and qualify them with the authors' assessment. Part 3 reviews the innovation and scaling challenges that must be addressed to realise NETs deployment as a viable climate mitigation strategy. Based on a systematic review of the literature, our best estimates for sustainable global NET potentials in 2050 are 0.5–3.6 GtCO2 yr−1 for afforestation and reforestation, 0.5–5 GtCO2 yr−1 for BECCS, 0.5–2 GtCO2 yr−1 for biochar, 2–4 GtCO2 yr−1 for enhanced weathering, 0.5–5 GtCO2 yr−1 for DACCS, and up to 5 GtCO2 yr−1 for soil carbon sequestration. Costs vary widely across the technologies, as do their permanency and cumulative potentials beyond 2050. It is unlikely that a single NET will be able to sustainably meet the rates of carbon uptake described in integrated assessment pathways consistent with 1.5 °C of global warming.