NobleBlocks

Mississippi Delta Community College

UniversityMoorhead, Mississippi, United States

Research output, citation impact, and the most-cited recent papers from Mississippi Delta Community College (United States). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
1.6K
Citations
59.9K
h-index
91
i10-index
1.1K
Also known as
Mississippi Delta Community College

Top-cited papers from Mississippi Delta Community College

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang, Yan Hu, Wenkai Jiang, Lei Fang +4 more
2015· Nature Biotechnology1.9Kdoi:10.1038/nbt.3207

Two draft sequences of Gossypium hirsutum, the most widely cultivated cotton species, provide insights into genome structure, genome rearrangement, gene evolution and cotton fiber biology. Upland cotton is a model for polyploid crop domestication and transgenic improvement. Here we sequenced the allotetraploid Gossypium hirsutum L. acc. TM-1 genome by integrating whole-genome shotgun reads, bacterial artificial chromosome (BAC)-end sequences and genotype-by-sequencing genetic maps. We assembled and annotated 32,032 A-subgenome genes and 34,402 D-subgenome genes. Structural rearrangements, gene loss, disrupted genes and sequence divergence were more common in the A subgenome than in the D subgenome, suggesting asymmetric evolution. However, no genome-wide expression dominance was found between the subgenomes. Genomic signatures of selection and domestication are associated with positively selected genes (PSGs) for fiber improvement in the A subgenome and for stress tolerance in the D subgenome. This draft genome sequence provides a resource for engineering superior cotton lines.

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Andrew H. Paterson, Jonathan F. Wendel, Heidrun Gundlach, Hui Guo +4 more
2012· Nature1.5Kdoi:10.1038/nature11798

The Gossypium genus is used to investigate emergent consequences of polyploidy in cotton species; comparative genomic analyses reveal a complex evolutionary history including interactions among subgenomes that result in genetic novelty in elite cottons and provide insight into the evolution of spinnable fibres. A phylogenetic and genomic study of plants of the cotton genus Gossypium provides insights into the role of polyploidy in the angiosperm evolution, and specifically, in the emergence of spinnable fibres in domesticated cottons. The authors show that an abrupt five- to sixfold ploidy increase about 60 million years ago, and allopolyploidy reuniting divergent genomes approximately 1–2 million years ago, conferred a roughly 30-fold duplication of ancestral flowering plant genes in the 'elite' cottons G. hirsutum and G. barbadense compared to their presumed progenitor G. raimondii. Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments1. Here we show that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1–2 Myr ago2, conferred about 30–36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica3 among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum AtDt (in which ‘t’ indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups.

Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage
Harkamal Walia, Clyde Wilson, Pascal Condamine, Xuan Liu +4 more
2005· PLANT PHYSIOLOGY482doi:10.1104/pp.105.065961

Rice (Oryza sativa), a salt-sensitive species, has considerable genetic variation for salt tolerance within the cultivated gene pool. Two indica rice genotypes, FL478, a recombinant inbred line derived from a population developed for salinity tolerance studies, and IR29, the sensitive parent of the population, were selected for this study. We used the Affymetrix rice genome array containing 55,515 probe sets to explore the transcriptome of the salt-tolerant and salt-sensitive genotypes under control and salinity-stressed conditions during vegetative growth. Response of the sensitive genotype IR29 is characterized by induction of a relatively large number of probe sets compared to tolerant FL478. Salinity stress induced a number of genes involved in the flavonoid biosynthesis pathway in IR29 but not in FL478. Cell wall-related genes were responsive in both genotypes, suggesting cell wall restructuring is a general adaptive mechanism during salinity stress, although the two genotypes also had some differences. Additionally, the expression of genes mapping to the Saltol region of chromosome 1 were examined in both genotypes. Single-feature polymorphism analysis of expression data revealed that IR29 was the source of the Saltol region in FL478, contrary to expectation. This study provides a genome-wide transcriptional analysis of two well-characterized, genetically related rice genotypes differing in salinity tolerance during a gradually imposed salinity stress under greenhouse conditions.

Impacts and management strategies for crop production in waterlogged or flooded soils: A review
Gurpreet Kaur, Gurbir Singh, Peter P. Motavalli, Kelly A. Nelson +2 more
2020· Agronomy Journal449doi:10.1002/agj2.20093

Abstract Globally, flooding is one of the most damaging abiotic stresses, besides drought, that affects 17 million km 2 of land surface annually. Recent research indicates that climate change is resulting in more extreme weather events, such as flooding or soil waterlogging, that negatively affect crop production. Therefore, it is imperative to understand how flooding stress affects crops and to develop improved production practices that make cropping systems more resilient and able to cope with extreme weather events. This review paper summarizes the current state of knowledge on the impacts of flooding or soil waterlogging on crop production losses, nitrogen (N) losses, and provides potential management strategies to reduce these losses. The factors affecting the extent of flooding injury in plants as well as plant adaptations under waterlogging stress are also discussed briefly. For the purpose of this review, “flooding” refers to the situation when all or part of the plant is submerged under water, whereas “soil waterlogging” refers to the situation where soil pores are saturated with water. Soil waterlogging also promotes soil N losses through runoff, leaching, and denitrification. Potential management practices that can be used to mitigate soil waterlogging stress include the use of flood‐tolerant varieties, adjusting management practices, improving drainage, and practicing adaptive nutrient management strategies. However, these might be site‐ or crop‐specific management practices and they should be validated for their economic viability before developing future management plans that promote sustainable crop yields from waterlogged soils.

Soybean Yield Loss Estimates Due to Diseases in the United States and Ontario, Canada, from 2010 to 2014
Tom W. Allen, Carl A. Bradley, Adam Sisson, Emmanuel Byamukama +4 more
2017· Plant Health Progress442doi:10.1094/php-rs-16-0066

Annual decreases in soybean (Glycine max L. Merrill) yield caused by diseases were estimated by surveying university-affiliated plant pathologists in 28 soybean-producing states in the United States and in Ontario, Canada, from 2010 through 2014. Estimated yield losses from each disease varied greatly by state or province and year. Over the duration of this survey, soybean cyst nematode (SCN) (Heterodera glycines Ichinohe) was estimated to have caused more than twice as much yield loss than any other disease. Seedling diseases (caused by various pathogens), charcoal rot (caused by Macrophomina phaseolina (Tassi) Goid), and sudden death syndrome (SDS) (caused by Fusarium virguliforme O’Donnell & T. Aoki) caused the next greatest estimated yield losses, in descending order. The estimated mean economic loss due to all soybean diseases, averaged across U.S. states and Ontario from 2010 to 2014, was $60.66 USD per acre. Results from this survey will provide scientists, breeders, governments, and educators with soybean yield-loss estimates to help inform and prioritize research, policy, and educational efforts in soybean pathology and disease management.

Corn Yield Loss Estimates Due to Diseases in the United States and Ontario, Canada from 2012 to 2015
Daren S. Mueller, Kiersten Wise, Adam Sisson, Tom W. Allen +4 more
2016· Plant Health Progress296doi:10.1094/php-rs-16-0030

Annual decreases in corn yield caused by diseases were estimated by surveying members of the Corn Disease Working Group in 22 corn-producing states in the United States and in Ontario, Canada, from 2012 through 2015. Estimated loss from each disease varied greatly by state and year. In general, foliar diseases such as northern corn leaf blight, gray leaf spot, and Goss's wilt commonly caused the largest estimated yield loss in the northern United States and Ontario during non-drought years. Fusarium stalk rot and plant-parasitic nematodes caused the most estimated loss in the southern-most United States. The estimated mean economic loss due to yield loss by corn diseases in the United States and Ontario from 2012 to 2015 was $76.51 USD per acre. The cost of disease-mitigating strategies is another potential source of profit loss. Results from this survey will provide scientists, breeders, government, and educators with data to help inform and prioritize research, policy, and educational efforts in corn pathology and disease management. Accepted for publication 26 August 2016.

Indicators of Resource Use Efficiency and Environmental Performance in Fish and Crustacean Aquaculture
Claude E. Boyd, Craig S. Tucker, Aaron A. McNevin, Katherine Bostick +1 more
2007· Reviews in Fisheries Science281doi:10.1080/10641260701624177

The aquaculture industry is under increasing pressure to make production more resource efficient and environmentally responsible. Application of better management practices is the main approach for improving the environmental performance of aquaculture. There are, however, few numerical indicators for comparing resource use and waste generation for culture of common species and by different grow-out techniques. Indicators are proposed for evaluating the efficiency with which feed, protein, fish meal, nutrients, liming materials, water, land, and energy are used in aquaculture. In addition, methods for evaluating amounts of nutrients and other possible pollutants generated by production facilities are suggested. The indicators are designed to reveal the quantities of resources used, or of waste discharged, per tonne of production. This will simplify comparisons among species and production systems and facilitate comparisons with other kinds of animal agriculture.

Dissecting the economic impact of soybean diseases in the United States over two decades
Ananda Y. Bandara, Dilooshi K. Weerasooriya, Carl A. Bradley, Tom W. Allen +1 more
2020· PLoS ONE267doi:10.1371/journal.pone.0231141

Soybean (Glycine max L. Merrill) is an economically important commodity for United States agriculture. Nonetheless, the profitability of soybean production has been negatively impacted by soybean diseases. The economic impacts of 23 common soybean diseases were estimated in 28 soybean-producing states in the U.S., from 1996 to 2016 (the entire data set consisted of 13,524 data points). Estimated losses were investigated using a variety of statistical approaches. The main effects of state, year, pre- and post-discovery of soybean rust, region, and zones based on yield, harvest area, and production, were significant on "total economic loss" as a function of diseases. Across states and years, the soybean cyst nematode, charcoal rot, and seedling diseases were the most economically damaging diseases while soybean rust, bacterial blight, and southern blight were the least economically damaging. A significantly greater mean loss (51%) was observed in states/years after the discovery of soybean rust (2004 to 2016) compared to the pre-discovery (1996 to 2003). From 1996 to 2016, the total estimated economic loss due to soybean diseases in the U.S. was $95.48 billion, with $80.89 billion and $14.59 billion accounting for the northern and southern U.S. losses, respectively. Over the entire time period, the average annual economic loss due to soybean diseases in the U.S. reached nearly $4.55 billion, with approximately 85% of the losses occurring in the northern U.S. Low yield/harvest/production zones had significantly lower mean economic losses due to diseases in comparison to high yield/harvest/production zones. This observation was further bolstered by the observed positive linear correlation of mean soybean yield loss (in each state, due to all diseases considered in this study, across 21 years) with the mean state wide soybean production (MT), mean soybean yield (kg ha-1), and mean soybean harvest area (ha). Results of this investigation provide useful insights into how research, policy, and educational efforts should be prioritized in soybean disease management.

Accumulation of genome‐specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton
S Samuel Yang, Foo Cheung, Jinsuk J. Lee, Misook Ha +4 more
2006· The Plant Journal214doi:10.1111/j.1365-313x.2006.02829.x

Gene expression during the early stages of fiber cell development and in allopolyploid crops is poorly understood. Here we report computational and expression analyses of 32 789 high-quality ESTs derived from Gossypium hirsutum L. Texas Marker-1 (TM-1) immature ovules (GH_TMO). The ESTs were assembled into 8540 unique sequences including 4036 tentative consensus sequences (TCs) and 4504 singletons, representing approximately 15% of the unique sequences in the cotton EST collection. Compared with approximately 178 000 existing ESTs derived from elongating fibers and non-fiber tissues, GH_TMO ESTs showed a significant increase in the percentage of genes encoding putative transcription factors such as MYB and WRKY and genes encoding predicted proteins involved in auxin, brassinosteroid (BR), gibberellic acid (GA), abscisic acid (ABA) and ethylene signaling pathways. Cotton homologs related to MIXTA, MYB5, GL2 and eight genes in the auxin, BR, GA and ethylene pathways were induced during fiber cell initiation but repressed in the naked seed mutant (N1N1) that is impaired in fiber formation. The data agree with the known roles of MYB and WRKY transcription factors in Arabidopsis leaf trichome development and the well-documented phytohormonal effects on fiber cell development in immature cotton ovules cultured in vitro. Moreover, the phytohormonal pathway-related genes were induced prior to the activation of MYB-like genes, suggesting an important role of phytohormones in cell fate determination. Significantly, AA sub-genome ESTs of all functional classifications including cell-cycle control and transcription factor activity were selectively enriched in G. hirsutum L., an allotetraploid derived from polyploidization between AA and DD genome species, a result consistent with the production of long lint fibers in AA genome species. These results suggest general roles for genome-specific, phytohormonal and transcriptional gene regulation during the early stages of fiber cell development in cotton allopolyploids.

Ecology of Blue‐Green Algae in Aquaculture Ponds
Hans W. Paerl, Craig S. Tucker
1995· Journal of the World Aquaculture Society208doi:10.1111/j.1749-7345.1995.tb00235.x

Abstract Cyanobacteria (blue‐green algae) in the genera Anabaena, Aphanizomenon, Microcystis , and Oscillatoria often form extensive and persistent blooms in freshwater aquaculture ponds. Bloom‐forming cyanobacteria are undesirable in aquaculture ponds because: 1) they are a relatively poor base for aquatic food chains; 2) they are poor oxygenators of the water and have undesirable growth habits; 3) some species produce odorous metabolites that impart undesirable flavors to the cultured animal; and 4) some species may produce compounds that are toxic to aquatic animals. Development of cyanobacterial blooms is favored under conditions of high nutrient loading rates (particularly if the availability of nitrogen is limited relative to phosphorus), low rates of vertical mixing, and warm water temperatures. Under those conditions, dominance of phytoplankton communities by cyanobacteria is the result of certain unique physiological attributes (in particular, N 2 fixation and buoyancy regulation) that allow cyanobacteria to compete effectively with other phytoplankton. The ability to fix N 2 provides a competitive advantage under severe nitrogen limitation because it allows certain cyanobacterial species to make use of a source of nitrogen unavailable to other phytoplankton. The ability to regulate cell buoyancy through environmentally‐controlled collapse ad reformation of intracellular gas vacuoles is perhaps the primary reason for the frequent dominance of aquaculture pond phytoplankton communities by cyanobacteria. Cyanobacteria that can regulate their position in the water column gain a distinct advantage over other phototrophs in poorly mixed bodies of water. In addition to the physicochemical interactions that influence phytoplankton community dynamics, cyanobacterial‐microbial associations may play an important regulatory role in determining community structure. Cyanobacteria are always found in close association with a diverse array of microorganisms, including eubacteria, fungi, and protozoans. These associations, which in the past have often been viewed as antagonistic, are increasingly seen as mutualistic and may function in a positive manner during bloom development.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of <i>Gossypium</i> spp.
Amanda M. Hulse‐Kemp, Jana Lemm, Joerg Plieske, Hamid Ashrafi +4 more
2015· G3 Genes Genomes Genetics207doi:10.1534/g3.115.018416

High-throughput genotyping arrays provide a standardized resource for plant breeding communities that are useful for a breadth of applications including high-density genetic mapping, genome-wide association studies (GWAS), genomic selection (GS), complex trait dissection, and studying patterns of genomic diversity among cultivars and wild accessions. We have developed the CottonSNP63K, an Illumina Infinium array containing assays for 45,104 putative intraspecific single nucleotide polymorphism (SNP) markers for use within the cultivated cotton species Gossypium hirsutum L. and 17,954 putative interspecific SNP markers for use with crosses of other cotton species with G. hirsutum. The SNPs on the array were developed from 13 different discovery sets that represent a diverse range of G. hirsutum germplasm and five other species: G. barbadense L., G. tomentosum Nuttal × Seemann, G. mustelinum Miers × Watt, G. armourianum Kearny, and G. longicalyx J.B. Hutchinson and Lee. The array was validated with 1,156 samples to generate cluster positions to facilitate automated analysis of 38,822 polymorphic markers. Two high-density genetic maps containing a total of 22,829 SNPs were generated for two F2 mapping populations, one intraspecific and one interspecific, and 3,533 SNP markers were co-occurring in both maps. The produced intraspecific genetic map is the first saturated map that associates into 26 linkage groups corresponding to the number of cotton chromosomes for a cross between two G. hirsutum lines. The linkage maps were shown to have high levels of collinearity to the JGI G. raimondii Ulbrich reference genome sequence. The CottonSNP63K array, cluster file and associated marker sequences constitute a major new resource for the global cotton research community.

Soybean Yield Loss Estimates Due to Diseases in the United States and Ontario, Canada, from 2015 to 2019
Carl A. Bradley, Thomas Wesley Allen, Adam Sisson, Gary C. Bergstrom +4 more
2021· Plant Health Progress207doi:10.1094/php-01-21-0013-rs

Soybean (Glycine max [L.] Merrill) yield losses as a result of plant diseases were estimated by university and government plant pathologists in 29 soybean producing states in the United States and in Ontario, Canada, from 2015 through 2019. In general, the estimated losses that resulted from each of 28 plant diseases or pathogens varied by state or province as well as year. Soybean cyst nematode (SCN) (Heterodera glycines Ichinohe) caused more than twice as much loss as any other disease during the survey period. Seedling diseases (caused by various pathogens), Sclerotinia stem rot (white mold) (caused by Sclerotinia sclerotiorum [Lib.] de Bary), and sudden death syndrome (caused by Fusarium virguliforme O’Donnell &amp; T. Aoki) caused the next greatest yield losses, in descending order. Following SCN, the most damaging diseases in the northern United States and Ontario differed from those in the southern United States. The estimated mean economic loss from all soybean diseases, averaged across the United States and Ontario, Canada was US$45 per acre (US$111 per hectare). The outcome from the current survey will provide pertinent information regarding the important soybean diseases and their overall severity in the soybean crop and help guide future research and Extension efforts on managing soybean diseases.

Corn Yield Loss Estimates Due to Diseases in the United States and Ontario, Canada, from 2016 to 2019
Daren S. Mueller, Kiersten Wise, Adam Sisson, Thomas Wesley Allen +4 more
2020· Plant Health Progress205doi:10.1094/php-05-20-0038-rs

Annual reductions in corn (Zea mays L.) yield caused by diseases were estimated by university Extension-affiliated plant pathologists in 26 corn-producing states in the United States and in Ontario, Canada, from 2016 through 2019. Estimated loss from each disease varied greatly by state or province and year. Gray leaf spot (caused by Cercospora zeae-maydis Tehon &amp; E.Y. Daniels) caused the greatest estimated yield loss in parts of the northern United States and Ontario in all years except 2019, and Fusarium stalk rot (caused by Fusarium spp.) also greatly reduced yield. Tar spot (caused by Phyllachora maydis Maubl.), a relatively new disease in the United States, was estimated to cause substantial yield loss in 2018 and 2019 in several northern states. Gray leaf spot and southern rust (caused by Puccinia polysora Underw.) caused the most estimated yield losses in the southern United States. Unfavorable wet and delayed harvest conditions in 2018 resulted in an estimated 2.5 billion bushels (63.5 million metric tons) of grain contaminated with mycotoxins. The estimated mean economic loss due to reduced yield caused by corn diseases in the United States and Ontario from 2016 to 2019 was US$55.90 per acre (US$138.13 per hectare). Results from this survey provide scientists, corn breeders, government agencies, and educators with data to help inform and prioritize research, policy, and educational efforts in corn pathology and disease management.

Principles of integrated agricultural systems: Introduction to processes and definition
John Hendrickson, Jon D. Hanson, D. L. Tanaka, Gretchen F. Sassenrath
2008· Renewable Agriculture and Food Systems198doi:10.1017/s1742170507001718

Abstract Agriculture has been very successful in addressing the food and fiber needs of today's world population. However, there are increasing concerns about the economic, environmental and social costs of this success. Integrated agricultural systems may provide a means to address these concerns while increasing sustainability. This paper reviews the potential for and challenges to integrated agricultural systems, evaluates different agricultural systems in a hierarchical systems framework, and provides definitions and examples for each of the systems. This paper also describes the concept of dynamic-integrated agricultural systems and calls for the development of principles to use in developing and researching integrated agricultural systems. The concepts in this paper have arisen from the first in a series of planned workshops to organize common principles, criteria and indicators across physiographic regions in integrated agricultural systems. Integrated agricultural systems have multiple enterprises that interact in space and time, resulting in a synergistic resource transfer among enterprises. Dynamic-integrated agricultural systems have multiple enterprises managed in a dynamic manner. The key difference between dynamic-integrated agricultural systems and integrated agricultural systems is in management philosophy. In an integrated agricultural system, management decisions, such as type and amount of commodities to produce, are predetermined. In a dynamic-integrated system, decisions are made at the most opportune time using the best available knowledge. We developed a hierarchical scheme for agricultural systems ranging from basic agricultural production systems, which are the simplest system with no resource flow between enterprises, to dynamic-integrated agricultural systems. As agricultural systems move up in the hierarchy, their complexity, amount of management needed, and sustainability also increases. A key aspect of sustainability is the ability to adapt to future challenges. We argue that sustainable systems need built-in flexibility to achieve this goal.

The Epidemiology of Bacterial Diseases in Food-Size Channel Catfish
Bruce A. Wagner, David J. Wise, Lester H. Khoo, Jeffery S. Terhune
2002· Journal of Aquatic Animal Health195doi:10.1577/1548-8667(2002)014<0263:teobdi>2.0.co;2

Enteric septicemia of catfish (ESC) and columnaris are the most economically important bacterial diseases affecting the channel catfish Ictalurus punctatus industry in the United States. Although these two diseases have been extensively researched, little is known about their prevalence and epidemiology in production systems. In 1997, a two-part survey of catfish producers in Alabama, Arkansas, Louisiana, and Mississippi was conducted to estimate the proportion of ponds and catfish operations that have these diseases and to develop information on the risk factors associated with reporting an occurrence. The response rates to the two phases of the survey were 65.6% and 75.3%, respectively. Overall, 78.1% of all operations and 42.1% of all ponds experienced problems with ESC/columnaris. Higher percentages of large operations and ponds on large operations experienced these problems. The most frequently reported average loss per outbreak of the two diseases was 200-2,000 lb (1 lb = 0.454 kg) per outbreak. Univariate analysis and multivariable regression modeling of the survey data identified three possible risk factors associated with ESC/columnaris, namely, operation size, stocking density, and feeding rate. Conversely, operations that produced their own fingerlings and those that drained ponds at intervals of 3 years or less were less likely to report losses. The associations identified in this study do not establish firm causal relationships, but they do generate hypotheses about managerial and environmental interactions that represent substantial risks to production.

Genome-wide transcriptional analysis of salinity stressed japonica and indica rice genotypes during panicle initiation stage
Harkamal Walia, Clyde Wilson, Linghe Zeng, Abdelbagi M. Ismail +2 more
2006· Plant Molecular Biology190doi:10.1007/s11103-006-9112-0

Rice yield is most sensitive to salinity stress imposed during the panicle initiation (PI) stage. In this study, we have focused on physiological and transcriptional responses of four rice genotypes exposed to salinity stress during PI. The genotypes selected included a pair of indicas (IR63731 and IR29) and a pair of japonica (Agami and M103) rice subspecies with contrasting salt tolerance. Physiological characterization showed that tolerant genotypes maintained a much lower shoot Na+ concentration relative to sensitive genotypes under salinity stress. Global gene expression analysis revealed a strikingly large number of genes which are induced by salinity stress in sensitive genotypes, IR29 and M103 relative to tolerant lines. We found 19 probe sets to be commonly induced in all four genotypes. We found several salinity modulated, ion homeostasis related genes from our analysis. We also studied the expression of SKC1, a cation transporter reported by others as a major source of variation in salt tolerance in rice. The transcript abundance of SKC1 did not change in response to salinity stress at PI stage in the shoot tissue of all four genotypes. However, we found the transcript abundance of SKC1 to be significantly higher in tolerant japonica Agami relative to sensitive japonica M103 under control and stressed conditions during PI stage.

Susceptibility to neonicotinoids and risk of resistance development in the brown planthopper, <i>Nilaparvata lugens</i> (Stål) (Homoptera: Delphacidae)
Yanhua Wang, Jin Chen, Yu Cheng Zhu, Ma ChongYong +2 more
2008· Pest Management Science169doi:10.1002/ps.1629

BACKGROUND: In recent years, outbreaks of the brown planthopper, Nilaparvata lugens (Stål), have occurred more frequently in China. The objective of this study was to determine the susceptibility of N. lugens to neonicotinoids and other insecticides in major rice production areas in China. RESULTS: Results indicated that substantial variations in the susceptibility to different insecticides existed in N. lugens. Field populations had developed variable resistance levels to neonicotinoids, with a high resistance level to imidacloprid (RR: 135.3-301.3-fold), a medium resistance level to imidaclothiz (RR: 35-41.2-fold), a low resistance level to thiamethoxam (up to 9.9-fold) and no resistance to dinotefuran, nitenpyram and thiacloprid (RR < 3-fold). Further examinations indicated that a field population had developed medium resistance level to fipronil (up to 10.5-fold), and some field populations had evolved a low resistance level to buprofezin. In addition, N. lugens had been able to develop 1424-fold resistance to imidacloprid in the laboratory after the insect was selected with imidacloprid for 26 generations. CONCLUSION: Long-term use of imidacloprid in a wide range of rice-growing areas might be associated with high levels of resistance in N. lugens. Therefore, insecticide resistance management strategies must be developed to prevent further increase in resistance.

Factors affecting germination of horseweed (<i>Conyza canadensis</i>)
Vijay K. Nandula, Thomas W. Eubank, Daniel H. Poston, Clifford H. Koger +1 more
2006· Weed Science166doi:10.1614/ws-06-006r2.1

The influence of environmental factors on germination and emergence of horseweed was examined in growth chamber experiments. Germination was highest (61%) under 24/20 C day/night temperature under light. Horseweed seed germination was observed under both light (13 h photoperiod) and complete darkness (24 h), but germination under continuous darkness was only 0 to 15% compared with 0 to 61% under light. All other experiments were conducted under 24/20 C and 13-h light conditions. Germination was 19 to 36% over a pH range from 4 to 10, with a trend toward higher germination under neutral-to-alkaline conditions. Horseweed germination was &gt; 20% at &lt; 40 mM NaCl concentration and lowest (4%) at 160 mM NaCl. These data suggest that even at high soil salinity conditions, horseweed can germinate. Germination of horseweed decreased from 25% to 2% as osmotic potential increased from 0 (distilled water) to −0.8 MPa, indicating that germination can still occur under moderate water stress conditions. Horseweed seedling emergence was at its maximum on the soil surface, and no seedlings emerged from seeds placed at a depth of 0.5 cm or higher.

Factors affecting seed germination, seedling emergence, and survival of texasweed (<i>Caperonia palustris</i>)
Clifford H. Koger, Krishna N. Reddy, Daniel H. Poston
2004· Weed Science165doi:10.1614/ws-03-139r2

Field, laboratory, and greenhouse experiments were conducted to determine the seed production potential and effect of environmental factors on germination, emergence, and survival of texasweed. Texasweed produced an average of 893 seed per plant, and 90% were viable. Seed exhibited dormancy, and prechilling did not release dormancy. Percent germination ranged from 56% for seed subjected to no prechilling to 1% for seed prechilled at 5 C for 140 d. Seed remained viable during extended prechilling conditions, with 80% of seed viable after 140 d of prechilling. Texasweed seed germinated over a range of 20 to 40 C, with optimum germination (54%) occurring with a fluctuating 40/30 C temperature regime. Seed germinated with fluctuating 12-h light/dark and constant dark conditions. Texasweed seed germinated over a broad range of pH, osmotic potential, and salt concentrations. Seed germination was 31 to 62% over a pH range from 4 to 10. Germination of texasweed ranged from 9 to 56% as osmotic potential decreased from − 0.8 MPa to 0 (distilled water). Germination was greater than 52% at less than 40 mM NaCl concentrations and lowest (27%) at 160 mM NaCl. Texasweed seedlings emerged from soil depths as deep as 7.5 cm (7% emergence), but emergence was &gt; 67% for seed placed on the soil surface or at a 1-cm depth. Texasweed seed did not germinate under saturated or flooded conditions, but seed survived flooding and germinated (23 to 25%) after flood removal. Texasweed seedlings 2.5 to 15 cm tall were not affected by emersion in 10-cm-deep flood for up to 14 d. These results suggest that texasweed seed is capable of germinating and surviving in a variety of climatic and edaphic conditions, and that flooding is not a viable management option for emerged plants of texasweed.

Resistance to Soybean Rust and Mode of Inheritance<sup>1</sup>
K. R. Bromfield, E. E. Hartwig
1980· Crop Science163doi:10.2135/cropsci1980.0011183x002000020026x

A study was conducted in containment facilities to determine the reaction to Phakopsora pachyrhizi Syd. (soybean rust) isolates from widely separated geographic areas on seven soybean [ Glycine max (L.) Merr.] strains rated moderately resistant in field planting in Taiwan. Additional studies were conducted to determine the mode of inheritance of resistance to several rust isolates. Soybean strains PI 230970 and PI 230971 were resistant when inoculated with P. pachyrhizi isolates Australia‐72‐1, India‐73‐1, Philippines‐77‐1, and Taiwan‐72‐1. The other five soybean strains, although rated moderately resistant in field planting in Taiwan, were rated susceptible in these studies. All were rated resistant to an isolate with low virulence from Puerto Rico. Individual trifoliolate leaves of soybean plants of an F 2 population of ‘Centennial’ × PI 230970 were inoculated with rust isolates from three different geographic areas. Plants rated as resistant to one isolate were resistant to all isolates. Similarly, plants rated susceptible to one isolate were susceptible to all isolates. A ratio of 92 resistant to 31 susceptible was obtained. Twenty‐five F 2 plants from the cross D75‐10169 × PI 230971 gave 19 resistant and six susceptible plants after inoculation with the Taiwan isolate. The results suggest a single dominant gene for resistance to soybean rust.