Punjab Agricultural University

An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.

An ordered draft sequence of the 17-gigabase hexaploid bread wheat ( Triticum aestivum ) genome has been produced by sequencing isolated chromosome arms. We have annotated 124,201 gene loci distributed nearly evenly across the homeologous chromosomes and subgenomes. Comparative gene analysis of wheat subgenomes and extant diploid and tetraploid wheat relatives showed that high sequence similarity and structural conservation are retained, with limited gene loss, after polyploidization. However, across the genomes there was evidence of dynamic gene gain, loss, and duplication since the divergence of the wheat lineages. A high degree of transcriptional autonomy and no global dominance was found for the subgenomes. These insights into the genome biology of a polyploid crop provide a springboard for faster gene isolation, rapid genetic marker development, and precise breeding to meet the needs of increasing food demand worldwide.

Climate change is a global threat to the food and nutritional security of the world. As greenhouse-gas emissions in the atmosphere are increasing, the temperature is also rising due to the greenhouse effect. The average global temperature is increasing continuously and is predicted to rise by 2 °C until 2100, which would cause substantial economic losses at the global level. The concentration of CO2, which accounts for a major proportion of greenhouse gases, is increasing at an alarming rate, and has led to higher growth and plant productivity due to increased photosynthesis, but increased temperature offsets this effect as it leads to increased crop respiration rate and evapotranspiration, higher pest infestation, a shift in weed flora, and reduced crop duration. Climate change also affects the microbial population and their enzymatic activities in soil. This paper reviews the information collected through the literature regarding the issue of climate change, its possible causes, its projection in the near future, its impact on the agriculture sector as an influence on physiological and metabolic activities of plants, and its potential and reported implications for growth and plant productivity, pest infestation, and mitigation strategies and their economic impact.

GENOTYPE-BY-ENVIRONMENT INTERACTION AND STABILITY ANALYSIS Genotype-by-Environment Interaction Heredity and Environment Genotype-by-Environment Interaction Implications of GEI in Crop Breeding Causes of Genotype-by-Environment Interaction Stability Analyses in Plant Breeding and Performance Trials Stability Analysis in Plant Breeding and Performance Trials Stability Concepts and Statistics Dealing with Genotype-by-Environment Interaction GGE Biplot: Genotype + GE Interaction GGE BIPLOT AND MULTI-ENVIRONMENTAL TRIAL ANALYSIS Theory of Biplot The Concept of Biplot The Inner-Product Property of a Biplot Visualizing the Biplot Relationships among Columns and among Rows Biplot Analysis of Two-Way Data Introduction to GGE Biplot The Concept of GGE and GGE Biplot The Basic Model for a GGE Biplot Methods of Singular Value Partitioning An Alternative Model for GGE Biplot Three Types of Data Transformation Generating a GGE Biplot Using Conventional Methods Biplot Analysis of Multi-Environment Trial Data Objectives of Multi-Environment Trial Data Analysis Simple Comparisons Using GGE Biplot Mega-Environment Investigation Cultivar Evaluation for a Given Mega-Environment Evaluation of Test Environments Comparison with the AMMI Biplot Interpreting Genotype-by-Environment Interaction GGE BIPLOT SOFTWARE AND APPLICATIONS TO OTHER TYPES OF TWO-WAY DATA GGE Biplot Software-The Solution for GGE Biplot Analyses The Need for GGE Biplot Software The Terminology of Entries and Testers Preparing Data File for GGE Biplot Organization of GGE Biplot Software Functions for a Genotype-by-Environment Dataset Function for a Genotype-by-Strain Dataset Application of GGE Biplot to Other Types of Two-way Data GGE Biplot Continues to Evolve Cultivar Evaluation Based on Multiple Traits Why Multiple Traits? Cultivar Evaluation Based on Multiple Traits Identifying Traits for Indirect Selection for Loaf Volume Identification of Redundant Traits Comparing Cultivars as Packages of Traits Investigation of Different Selection Strategies Systems Understanding of Crop Improvement Three-Mode Principal Component Analysis and Visualization QTL Identification Using GGE Biplot Why Biplot? Data Source and Model Grouping of Linked Markers Gene Mapping Using Biplot QTL Identification via GGE Biplot Interconnectedness among Traits and Pleiotropic Effects of a Given Locus Understanding DH Lines through the Biplot Pattern QTL and GE Interaction Biplot Analysis of Diallel Data Model for Biplot Analysis of Diallel Data General Combining Ability of Parents Specific Combining Ability of Parents Heterotic Groups The Best Testers for Assessing General Combining Ability of Parents The Best Crosses Hypothesis on the Genetic Constitution of Parents Targeting a Large Dataset Advantages and Disadvantages of the Biplot Approach Biplot Analysis of Host Genotype-by-Pathogen Strain Interactions Vertical vs. Horizontal Resistance Genotype-By-Strain Interaction for a Barley Net Blotch Genotype-by-Strain Interaction for Wheat Fusarium Head Blight Biplot Analysis to Detect Synergism between Genotypes of Different Species Genotype-by-Strain Interaction for Nitrogen-Fixation Wheat-Maize Interaction for Wheat Haploid Embryo Formation References Index

Abstract Nitrate pollution of ground and surface water bodies all over the world is generally linked with continually increasing global fertilizer nitrogen (N) use. But after 1990, with more fertilizer N consumption in developing countries especially in East and South Asia than in the industrialized nations in North America and Europe, nitrate pollution of freshwaters is now increasingly becoming a pervasive global problem. In this review it has been attempted to review the research information generated during the last two decades from all over the world on different aspects of nitrate pollution of natural water bodies. It is now evident that not more than 50% of the fertilizer N is directly used by the crops to which it is applied. While a small portion may directly leach down and may reach ground and surface water bodies, a large proportion ends up in the soil organic N pool from where N is mineralized and is taken up by plants and/or lost via leaching during several decades. Present trends of nitrate pollution of freshwaters, therefore, reflect legacies of current and past applications of fertilizers and manures. Tools such as simulation models and the natural variation in the stable isotopes of N and oxygen are now being extensively used to study the contribution of fertilizers and other sources to nitrate enrichment of freshwaters. Impacts of agricultural stewardship measures are being assessed and nitrate enrichment of water bodies is being managed using modern digital models and frameworks. Improved water and fertilizer management in agroecosystems can reduce the contribution of fertilizers to nitrate pollution of water bodies but a host of factors determine the magnitude. Future research needs are also considered.

Edible coatings are an environmentally friendly technology that is applied on many products to control moisture transfer, gas exchange or oxidation processes. Edible coatings can provide an additional protective coating to produce and can also give the same effect as modified atmosphere storage in modifying internal gas composition. One major advantage of using edible films and coatings is that several active ingredients can be incorporated into the polymer matrix and consumed with the food, thus enhancing safety or even nutritional and sensory attributes. But, in some cases, edible coatings were not successful. The success of edible coatings for fresh products totally depends on the control of internal gas composition. Quality criteria for fruits and vegetables coated with edible films must be determined carefully and the quality parameters must be monitored throughout the storage period. Color change, firmness loss, ethanol fermentation, decay ratio and weight loss of edible film coated fruits need to be monitored. This review discusses the use of different edible coatings (polysaccharides, proteins, lipids and composite) as carriers of functional ingredients on fresh fruits and vegetables to maximize their quality and shelf life. This also includes the recent advances in the incorporation of antimicrobials, texture enhancers and nutraceuticals to improve quality and functionality of fresh-cut fruits. Sensory implications, regulatory status and future trends are also reviewed.

There is an urgent need to match food production with increasing world population through identification of sustainable land management strategies. However, the struggle to achieve food security should be carried out keeping in mind the soil where the crops are grown and the environment in which the living things survive. Conservation agriculture (CA), practising agriculture in such a way so as to cause minimum damage to the environment, is being advocated at a large scale world-wide. Conservation tillage, the most important aspect of CA, is thought to take care of the soil health, plant growth and the environment. This paper aims to review the work done on conservation tillage in different agro-ecological regions so as to understand its impact from the perspectives of the soil, the crop and the environment. Research reports have identified several benefits of conservation tillage over conventional tillage (CT) with respect to soil physical, chemical and biological properties as well as crop yields. Not less than 25% of the greenhouse gas effluxes to the atmosphere are attributed to agriculture. Processes of climate change mitigation and adaptation found zero tillage (ZT) to be the most environmental friendly among different tillage techniques. Therefore, conservation tillage involving ZT and minimum tillage which has potential to break the surface compact zone in soil with reduced soil disturbance offers to lead to a better soil environment and crop yield with minimal impact on the environment. Keywords: Atmosphere, Greenhouse gases, Conservation tillage, Sustainable crop yield

Dramatic accumulation of proline is a common physiological response in plants exposed to various abiotic stresses. Accumulation of proline could be due to de novo synthesis, decreased degradation, lower utilization, or hydrolysis of proteins. Extensive intercellular proline transport occurs between the cytosol, chloroplasts, and mitochondria due to its compartmentalized metabolism. Although all functions of proline in stress tolerance are still a matter of debate, it is suggested that proline contributes to stabilization of sub-cellular structures, scavenging free radicals, and buffering cellular redox potential. It also chelates heavy metals, modulates cellular functions, and even triggers gene expression. Apparently, proline acts as stress-related signal exhibiting cross tolerance to a range of different stresses. Besides these significant roles, its metabolism is found to be coupled to several key pathways such as pentose phosphate, tricarboxylic acid, or urea cycles and contributes to, i.e., purine synthesis and the phenylpropanoid pathway. Although the molecular basis of regulation of proline metabolism is still largely obscure, the genetic engineering of proline content could lead to new opportunities to achieve plant stress tolerance.

Environmental pollution brought on by xenobiotics and other related recalcitrant compounds have recently been identified as a major risk to both human health and the natural environment. Due to their toxicity and non-biodegradability, a wide range of pollutants, such as heavy metals, polychlorinated biphenyls, plastics, and various agrochemicals are present in the environment. Bioremediation is an effective cleaning technique for removing toxic waste from polluted environments that is gaining popularity. Various microorganisms, including aerobes and anaerobes, are used in bioremediation to treat contaminated sites. Microorganisms play a major role in bioremediation, given that it is a process in which hazardous wastes and pollutants are eliminated, degraded, detoxified, and immobilized. Pollutants are degraded and converted to less toxic forms, which is a primary goal of bioremediation. Ex situ or in situ bioremediation can be used, depending on a variety of factors, such as cost, pollutant types, and concentration. As a result, a suitable bioremediation method has been chosen. This review focuses on the most recent developments in bioremediation techniques, how microorganisms break down different pollutants, and what the future holds for bioremediation in order to reduce the amount of pollution in the world.

For many years, conventional plastics are manufactured and used for packaging applications in different sectors. As the food industries are increasing, the demand for packaging material is also increasing. Plastics have transformed the food industry to higher levels; however, conventional petroleum-based plastics are non-degradable which has created severe ecological problems to the environment like a threat to aquatic life and degrading air quality. Biodegradable polymers or biopolymers emerged as an alternative approach for many industrial applications to control the risk caused by non-biodegradable plastic. According to the type of starting material, they have been categorized as polymers extracted from biomass, synthesized from monomers, and produced from microorganisms. The quality of biopolymers depends on the physical, mechanical, thermal, and barrier properties. The present review highlights the characteristics of various biopolymers and their blends, comparison of properties between non-biodegradable and biopolymers, the market potential for food packaging applications. The review also emphasizes different commercial forms like films, trays, bags, coatings, and foamed products for application as modified atmosphere packaging, active packaging, and edible packaging. Different issues affecting market growth like harmful products formed during production and consumer perception have also been discussed. Information on biopolymers is widely scattered over many sources, this article aims to provide an overview of biodegradable polymer packages for food applications.

Abstract Antioxidants are added to fresh and processed meat and meat products to prevent lipid oxidation, retard development of off‐flavors, and improve color stability. In the food industry, they can be divided into natural and synthetic antioxidants. Synthetic antioxidants have been confirmed for their toxicological and carcinogenic effects. Thus, the food industry now chooses natural products over synthetic ones. This review provides an overview of the current trends in the use of antioxidants from natural sources, for potential applications in meat and meat products. These natural antioxidants contain some active compounds, which exert antioxidative potential in meat and meat products by different mechanisms of action. The efficient extraction of these antioxidants from their natural sources, along with establishing their in vitro and in producto antioxidant activity, has been a great challenge for researchers engaged in this field. Therefore, this review is focused on all these aspects, along with current studies related to this area, to provide in‐depth information to readers.

Attempts to apply nanotechnology in agriculture began with the growing realization that conventional farming technologies would neither be able to increase productivity any further nor restore ecosystems damaged by existing technologies back to their pristine state; in particular because the long-term effects of farming with "miracle seeds", in conjunction with irrigation, fertilizers, and pesticides, have been questioned both at the scientific and policy levels, and must be gradually phased out. Nanotechnology in agriculture has gained momentum in the last decade with an abundance of public funding, but the pace of development is modest, even though many disciplines come under the umbrella of agriculture. This could be attributed to: a unique nature of farm production, which functions as an open system whereby energy and matter are exchanged freely; the scale of demand of input materials always being gigantic in contrast with industrial nanoproducts; an absence of control over the input nanomaterials in contrast with industrial nanoproducts (eg, the cell phone) and because their fate has to be conceived on the geosphere (pedosphere)-biosphere-hydrosphere-atmosphere continuum; the time lag of emerging technologies reaching the farmers' field, especially given that many emerging economies are unwilling to spend on innovation; and the lack of foresight resulting from agricultural education not having attracted a sufficient number of brilliant minds the world over, while personnel from kindred disciplines might lack an understanding of agricultural production systems. If these issues are taken care of, nanotechnologic intervention in farming has bright prospects for improving the efficiency of nutrient use through nanoformulations of fertilizers, breaking yield barriers through bionanotechnology, surveillance and control of pests and diseases, understanding mechanisms of host-parasite interactions at the molecular level, development of new-generation pesticides and their carriers, preservation and packaging of food and food additives, strengthening of natural fibers, removal of contaminants from soil and water, improving the shelf-life of vegetables and flowers, clay-based nanoresources for precision water management, reclamation of salt-affected soils, and stabilization of erosion-prone surfaces, to name a few.

We report the first measurement of the $\ensuremath{\tau}$ lepton polarization ${P}_{\ensuremath{\tau}}({D}^{*})$ in the decay $\overline{B}\ensuremath{\rightarrow}{D}^{*}{\ensuremath{\tau}}^{\ensuremath{-}}{\overline{\ensuremath{\nu}}}_{\ensuremath{\tau}}$ as well as a new measurement of the ratio of the branching fractions $R({D}^{*})=\mathcal{B}(\overline{B}\ensuremath{\rightarrow}{D}^{*}{\ensuremath{\tau}}^{\ensuremath{-}}{\overline{\ensuremath{\nu}}}_{\ensuremath{\tau}})/\mathcal{B}(\overline{B}\ensuremath{\rightarrow}{D}^{*}{\ensuremath{\ell}}^{\ensuremath{-}}{\overline{\ensuremath{\nu}}}_{\ensuremath{\ell}})$, where ${\ensuremath{\ell}}^{\ensuremath{-}}$ denotes an electron or a muon, and the $\ensuremath{\tau}$ is reconstructed in the modes ${\ensuremath{\tau}}^{\ensuremath{-}}\ensuremath{\rightarrow}{\ensuremath{\pi}}^{\ensuremath{-}}{\ensuremath{\nu}}_{\ensuremath{\tau}}$ and ${\ensuremath{\tau}}^{\ensuremath{-}}\ensuremath{\rightarrow}{\ensuremath{\rho}}^{\ensuremath{-}}{\ensuremath{\nu}}_{\ensuremath{\tau}}$. We use the full data sample of $772\ifmmode\times\else\texttimes\fi{}1{0}^{6}\text{ }\text{ }B\overline{B}$ pairs recorded with the Belle detector at the KEKB electron-positron collider. Our results, ${P}_{\ensuremath{\tau}}({D}^{*})=\ensuremath{-}0.38\ifmmode\pm\else\textpm\fi{}0.51{(\text{stat})}_{\ensuremath{-}0.16}^{+0.21}(\text{syst})$ and $R({D}^{*})=0.270\ifmmode\pm\else\textpm\fi{}0.035{(\text{stat})}_{\ensuremath{-}0.025}^{+0.028}(\text{syst})$, are consistent with the theoretical predictions of the standard model.

Abstract: Plant root exudates play important roles in the rhizosphere. We tested three media (nutrient solution, deionized water and CaSO 4 solution) for three periods of time (2, 4 and 6 h) for collecting root exudates of soil‐grown rice plants. Nutrient culture solution created complications in the analyses of exudates for total organic C (TOC) by the wet digestion method and of organic acids by HPLC due to the interference by its components. Deionized water excluded such interference in analytical analyses but affected the turgor of root cells; roots of four widely different rice cultivars excreted 20 to 60 % more TOC in deionized water than in 0.01 M CaSO 4 . Furthermore, the proportion of carbohydrates in TOC was also enhanced. Calcium sulfate solution maintained the osmotic environment for root cells and did not interfere in analytical procedures. Collection for 2 h avoided under‐estimation of TOC and its components exuded by rice roots, which occurred during prolonged exposure. By placing plants in 0.01 M CaSO 4 for 2 h, root exudates of soil‐grown traditional, tall rice cultivars (Dular, B40 and Intan), high‐yielding dwarf cultivars (IR72, IR52, IR64 and PSBRc 20), new plant type cultivars (IR65598 and IR65600) and a hybrid (Magat) were collected at seedling, panicle initiation, flowering and maturity and characterized for TOC and organic acids. The exudation rates were, in general, lowest at seedling stage, increased until flowering but decreased at maturity. Among organic acids, malic acid showed the highest concentration followed by tartaric, succinic, citric and lactic acids. With advancing plant growth, exudation of organic acids substituted exudation of sugars. Root and shoot biomass were positively correlated with carbon exudation suggesting that it is driven by plant biomass. As root exudates provide substrates for methanogenesis in rice fields, large variations in root exudation by cultivars and at different growth stages could greatly influence CH 4 emissions. Therefore, the use of high‐yielding cultivars with lowest root excretions, for example IR65598 and IR65600, would mediate low exudate‐induced CH 4 production. The screening of exciting rice cultivars and breeding of new cultivars with low exudation rates could offer an important option for mitigation of CH 4 emission from rice agriculture to the atmosphere.

Disease control is largely based on the use of fungicides, bactericides, and insecticides-chemical compounds toxic to plant invaders, causative agents, or vectors of plant diseases. However, the hazardous effect of these chemicals or their degradation products on the environment and human health strongly necessitates the search for new, harmless means of disease control. There must be some natural phenomenon of induced resistance to protect plants from disease. Elicitors are compounds, which activate chemical defense in plants. Various biosynthetic pathways are activated in treated plants depending on the compound used. Commonly tested chemical elicitors are salicylic acid, methyl salicylate, benzothiadiazole, benzoic acid, chitosan, and so forth which affect production of phenolic compounds and activation of various defense-related enzymes in plants. Their introduction into agricultural practice could minimize the scope of chemical control, thus contributing to the development of sustainable agriculture. This paper chiefly highlights the uses of elicitors aiming to draw sufficient attention of researchers to the frontier research needed in this context.

A unique colorimetric method for the quantitative determination of phospholipids that does not involve the acid digestion of the lipid is described. The phospholipids, after separation by thin-layer chromatography and elution from the silica gel, are heated with a chromogenic solution that is a modification of a spray reagent formulated by Vaskovsky and Kostetsky (1968, J. Lipid Res., 9: 396). The absorbance of the colored complex was read at 710 nm, and it followed Beer's law in the range of 1-10 micro g of phospholipid phosphorus.

The dynamics and transformations of micronutrients (Zn, Cu, Fe, Mn, B and Mo) in soils, are governed by various factors like pH, EC, soil organic matter etc. Soil organic matter (SOM) is known to modify different physiochemical reactions that influence the available component of micronutrients. Soil organic matter favors reduced (lower redox potential) environment and enhances the accessibility of micronutrient cations in the soil. Also, SOM has direct and indirect impacts on nutrient transformations. Soil organic matter (SOM) also serves as source of soil organic carbon (SOC) comprising about 60% on a mass basis. Under reduced environment the addition of SOM increased complexed forms of micronutrients. Build-up of SOM in soil converts adsorbed fractions to more plant-accessible forms of micronutrients. Soil organic matter addition increases the water soluble and exchangeable forms of micronutrients in soil which further increase the uptake of micronutrients. High amount of SOM in soils assists the various reactions of micronutrients resulting in formation of more stable complexes of micronutrient. Soil organic matter binds more Zn, Cu, B and Mo compared to Fe and Mn because the former are less sensitive to redox changes. The accretion of organic matter near the soil surface increases transformations (towards adsorbed fractions) of Mn and Fe and possibly decreases the availability of Zn, Cu, B and Mo by causing their redistribution among other complex fractions.

A.4 Constraining the flux in the ND A.4.1 Neutrino-electron elastic scattering A.4.2 The low- method A.4.3 Coherent neutrino-nucleus scattering A.4.4 Beam e content A.5 Movable components of the ND and the DUNE-PRISM program A.5.1 Introduction to DUNE-PRISM A.5.2 LArTPC component in the DUNE ND: ArgonCube A.5.3 Multipurpose detector A.5.4 The DUNE-PRISM program A.6 Fixed on-axis component of the DUNE ND A.6.1 Motivation and introduction A.6.2 Three-dimensional projection scintillator tracker spectrometer A.7 Meeting the near detector requirements A.7.1 Overarching requirements A.7.2 Event rate and flux measurements A.7.3 Control of systematic errors B ND hall and construction C Computing roles and collaborative projects C.1 Roles C.2 Specific collaborative computing projects C.2.1 LArSoft for event reconstruction C.2.2 WLCG/OSG and the HEP Software Foundation C.2.3 Evaluations of other important infrastructure

The development of a suitable technology for the production of probiotics is a key research for industrial production, which should take into account the viability and the stability of the organisms involved. Microbial criteria, stress tolerance during processing, and storage of the product constitute the basis for the production of probiotics. Generally, the bacteria belonging to the genera Lactobacillus and Bifidobacterium have been used as probiotics. Based on their positive qualities, probiotic bacteria are widely used in the production of food. Interest in the incorporation of the probiotic bacteria into other products apart from dairy products has been increasing and represents a great challenge. The recognition of dose delivery systems for probiotic bacteria has also resulted in research efforts aimed at developing probiotic food outside the dairy sector. Producing probiotic juices has been considered more in the recent years, due to an increased concern in personal health of consumers. This review focuses on probiotics, prebiotics, and the microencapsulation of living cells.

Anthocyanins are one of the six subgroups of large and widespread group of plant constituents known as flavonoids. These are responsible for the bright and attractive orange, red, purple, and blue colors of most fruits, vegetables, flowers and some cereal grains. More than 600 structurally distinct anthocyanins have been identified in nature. Earlier, anthocyanins were only known for their coloring properties but now interest in anthocyanin pigments has intensified because of their possible health benefits as dietary antioxidants, which help to prevent neuronal diseases, cardiovascular illnesses, cancer, diabetes, inflammation, and many such others diseases. Ability of anthocyanins to counter oxidants makes them atherosclerosis fighters. Therefore, anthocyanin-rich foods may help to boost overall health by offering an array of nutrients. However, the incorporation of anthocyanins into food and medical products is a challenging task due to their low stability toward environmental conditions during processing and storage. Encapsulation seems to be an efficient way to introduce such compounds into these products. Encapsulating agents act as a protector coat against ambient adverse conditions such as light, humidity, and oxygen. Encapsulated bioactive compounds are easier to handle and offer improved stability. The main objective of this review is to explore health benefits of anthocyanins and their extraction, characterization, encapsulation, and delivery.