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Tamil Nadu Agricultural University

UniversityCoimbatore, India

Research output, citation impact, and the most-cited recent papers from Tamil Nadu Agricultural University (India). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
17.6K
Citations
382.1K
h-index
177
i10-index
8.0K
Also known as
Tamil Nadu Agricultural UniversityUniversité agricole de tamil naduतमिल नाडु कृषि विश्वविद्यालयதமிழ்நாடு வேளாண்மைப் பல்கலைக்கழகம்തമിഴ്നാട് കാർഷിക സർവകലാശാല

Top-cited papers from Tamil Nadu Agricultural University

Polyethylene and biodegradable mulches for agricultural applications: a review
K. Subrahmaniyan, Mathieu Ngouajio
2012· Agronomy for Sustainable Development1.3Kdoi:10.1007/s13593-011-0068-3

The use of plastic mulch in agriculture has increased dramatically in the last 10 years throughout the world. This increase is due to benefits such as increase in soil temperature, reduced weed pressure, moisture conservation, reduction of certain insect pests, higher crop yields, and more efficient use of soil nutrients. However, disposing of used plastic films, which cause pollution, has led to development of photodegradable and biodegradable mulches. Here we review the use of plastic mulches in agriculture, with special reference to biodegradable mulches. Major topics discussed are (1) history of plastic mulch and impact on crop yield and pest management, (2) limitations of polyethylene mulches and potential alternatives, (3) biodegradable and photodegradable plastic mulches, (4) field performance of biodegradable mulches, and (5) use of biodegradable plastic mulches in organic production. We found that (1) despite multiple benefits, removal and disposal of conventional polyethylene mulches remains a major agronomic, economic, and environmental constraint; (2) early use of photodegradable plastic mulch during the 1970s and 1980s, wrongly named biodegradable mulch films, discouraged adoption of new biodegradable mulch films because they were too expensive and their breakdown was unpredictable; (3) biodegradable plastic films are converted through microbial activity in the soil to carbon dioxide, water, and natural substances; (4) polymers such as poly(lactic acid), poly(butylene adipate-coterephthalate), poly(ε-caprolactone), and starch-based polymer blends or copolymers can degrade when exposed to bioactive environments such as soil and compost; (5) with truly biodegradable materials obtained from petroleum and natural resources, opportunity for using biodegradable polymers as agricultural mulch films has become more viable; and (6) the source of polymer and additives may limit use of some biodegradable mulches in organic production. More knowledge is needed on the effect of biodegradable mulches on crop growth, microclimate modifications, soil biota, soil fertility, and yields.

Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives
Mahalingam Govindaraj, Mani Vetriventhan, Mahalingam Srinivasan
2015· Genetics Research International927doi:10.1155/2015/431487

The importance of plant genetic diversity (PGD) is now being recognized as a specific area since exploding population with urbanization and decreasing cultivable lands are the critical factors contributing to food insecurity in developing world. Agricultural scientists realized that PGD can be captured and stored in the form of plant genetic resources (PGR) such as gene bank, DNA library, and so forth, in the biorepository which preserve genetic material for long period. However, conserved PGR must be utilized for crop improvement in order to meet future global challenges in relation to food and nutritional security. This paper comprehensively reviews four important areas; (i) the significance of plant genetic diversity (PGD) and PGR especially on agriculturally important crops (mostly field crops); (ii) risk associated with narrowing the genetic base of current commercial cultivars and climate change; (iii) analysis of existing PGD analytical methods in pregenomic and genomic era; and (iv) modern tools available for PGD analysis in postgenomic era. This discussion benefits the plant scientist community in order to use the new methods and technology for better and rapid assessment, for utilization of germplasm from gene banks to their applied breeding programs. With the advent of new biotechnological techniques, this process of genetic manipulation is now being accelerated and carried out with more precision (neglecting environmental effects) and fast-track manner than the classical breeding techniques. It is also to note that gene banks look into several issues in order to improve levels of germplasm distribution and its utilization, duplication of plant identity, and access to database, for prebreeding activities. Since plant breeding research and cultivar development are integral components of improving food production, therefore, availability of and access to diverse genetic sources will ensure that the global food production network becomes more sustainable. The pros and cons of the basic and advanced statistical tools available for measuring genetic diversity are briefly discussed and their source links (mostly) were provided to get easy access; thus, it improves the understanding of tools and its practical applicability to the researchers.

Smart Farming: Internet of Things (IoT)-Based Sustainable Agriculture
D Muthumanickam, C. Poongodi, R. Kumaraperumal, S Pazhanivelan +1 more
2022· Agriculture685doi:10.3390/agriculture12101745

Smart farming is a development that has emphasized information and communication technology used in machinery, equipment, and sensors in network-based hi-tech farm supervision cycles. Innovative technologies, the Internet of Things (IoT), and cloud computing are anticipated to inspire growth and initiate the use of robots and artificial intelligence in farming. Such ground-breaking deviations are unsettling current agriculture approaches, while also presenting a range of challenges. This paper investigates the tools and equipment used in applications of wireless sensors in IoT agriculture, and the anticipated challenges faced when merging technology with conventional farming activities. Furthermore, this technical knowledge is helpful to growers during crop periods from sowing to harvest; and applications in both packing and transport are also investigated.

ACC deaminase from Pseudomonas fluorescens mediated saline resistance in groundnut (Arachis hypogea) plants
D. Saravanakumar, R. Samiyappan
2006· Journal of Applied Microbiology500doi:10.1111/j.1365-2672.2006.03179.x

AIM: To study the effect of 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase from Pseudomonas fluorescens against saline stress under in vitro and field conditions in groundnut (Arachis hypogea) plants. METHODS AND RESULTS: Four plant growth-promoting rhizobacteria (PGPR) strains were used in this study to evaluate their efficacy in groundnut plants against saline stress under in vitro. Among the four PGPR strains used, Ps. fluorescens strain TDK1 showed greater performance in improving the plant growth parameters of groundnut seedlings in vitro. PCR amplification using Pseudomonas-specific 16S-23S rRNA internal transcribed spacers (ITS) primers revealed that all the four strains belonged to the group of fluorescent pseudomonads. ITS region of Ps. fluorescens strain TDK1 was cloned and sequenced. ACC deaminase activity using biochemical and molecular (PCR) analysis revealed that among all the four strains, Ps. fluorescens strain TDK1 showed greater amount of ACC deaminase activity and positive reaction to PCR amplification. ACC deaminase gene from Ps. fluorescens strain TDK1 was isolated, cloned and sequenced. Pseudomonas bioformulations were developed and they were tested in groundnut plants under saline-affected soils. The results indicated the superior performance by Ps. fluorescens strain TDK1 possessing ACC deaminase activity in improving yield parameters in groundnut plants despite salinity. CONCLUSIONS: Pseudomonas fluorescens strain TDK1 possessing ACC deaminase activity enhanced the saline resistance in groundnut plants, which in turn resulted in increased yield when compared with the groundnuts treated with Pseudomonas strains not having ACC deaminase activity. SIGNIFICANCE AND IMPACT OF THE STUDY: The promising role of ACC deaminase from Ps. fluorescens strain TDK1 in alleviating saline stress has been concluded in groundnut plants. This study will be useful for exploiting the activity of ACC deaminase from microbial strains against various biotic and abiotic stresses wherever ACC accumulated as precursor for ethylene biosynthesis.

Role of Cytochrome P450 Enzymes in Plant Stress Response
Balaji Aravindhan Pandian, Rajendran Sathishraj, M. Djanaguiraman, P. V. Vara Prasad +1 more
2020· Antioxidants451doi:10.3390/antiox9050454

-dependent hydroxylation reactions across all the domains of life. In plants and animals, CYPs play a central role in the detoxification of xenobiotics. In addition to this function, CYPs act as versatile catalysts and play a crucial role in the biosynthesis of secondary metabolites, antioxidants, and phytohormones in higher plants. The molecular and biochemical processes catalyzed by CYPs have been well characterized, however, the relationship between the biochemical process catalyzed by CYPs and its effect on several plant functions was not well established. The advent of next-generation sequencing opened new avenues to unravel the involvement of CYPs in several plant functions such as plant stress response. The expression of several CYP genes are regulated in response to environmental stresses, and they also play a prominent role in the crosstalk between abiotic and biotic stress responses. CYPs have an enormous potential to be used as a candidate for engineering crop species resilient to biotic and abiotic stresses. The objective of this review is to summarize the latest research on the role of CYPs in plant stress response.

AI-powered banana diseases and pest detection
Michael Gomez Selvaraj, Alejandro Perdomo Vergara, Henry Ruiz, Nancy Safari +3 more
2019· Plant Methods430doi:10.1186/s13007-019-0475-z

Banana (Musa spp.) is the most popular marketable fruit crop grown all over the world, and a dominant staple food in many developing countries. Worldwide, banana production is affected by numerous diseases and pests. Novel and rapid methods for the timely detection of pests and diseases will allow to surveil and develop control measures with greater efficiency. As deep convolutional neural networks (DCNN) and transfer learning has been successfully applied in various fields, it has freshly moved in the domain of just-in-time crop disease detection. The aim of this research is to develop an AI-based banana disease and pest detection system using a DCNN to support banana farmers. Large datasets of expert pre-screened banana disease and pest symptom/damage images were collected from various hotspots in Africa and Southern India. To build a detection model, we retrained three different convolutional neural network (CNN) architectures using a transfer learning approach. A total of six different models were developed from 18 different classes (disease by plant parts) using images collected from different parts of the banana plant. Our studies revealed ResNet50 and InceptionV2 based models performed better compared to MobileNetV1. These architectures represent the state-of-the-art results of banana diseases and pest detection with an accuracy of more than 90% in most of the models tested. These experimental results were comparable with other state-of-the-art models found in the literature. With a future view to run these detection capabilities on a mobile device, we evaluated the performance of SSD (single shot detector) MobileNetV1. Performance and validation metrics were also computed to measure the accuracy of different models in automated disease detection methods. Our results showed that the DCNN was a robust and easily deployable strategy for digital banana disease and pest detection. Using a pre-trained disease recognition model, we were able to perform deep transfer learning (DTL) to produce a network that can make accurate predictions. This significant high success rate makes the model a useful early disease and pest detection tool, and this research could be further extended to develop a fully automated mobile app to help millions of banana farmers in developing countries.

Isolation, Characterization, and Use for Plant Growth Promotion Under Salt Stress, of ACC Deaminase-Producing Halotolerant Bacteria Derived from Coastal Soil
Md. Ashaduzzaman Siddikee, Puneet Singh Chauhan, R. Anandham, Gwang-Hyun Han +1 more
2010· Journal of Microbiology and Biotechnology405doi:10.4014/jmb.1007.07011

In total, 140 halotolerant bacterial strains were isolated from both the soil of barren fields and the rhizosphere of six naturally growing halophytic plants in the vicinity of the Yellow Sea, near the city of Incheon in the Republic of Korea. All of these strains were characterized for multiple plant growth promoting traits, such as the production of indole acetic acid (IAA), nitrogen fixation, phosphorus (P) and zinc (Zn) solubilization, thiosulfate (S2O3) oxidation, the production of ammonia (NH3), and the production of extracellular hydrolytic enzymes such as protease, chitinase, pectinase, cellulase, and lipase under in vitro conditions. From the original 140 strains tested, on the basis of the latter tests for plant growth promotional activity, 36 were selected for further examination. These 36 halotolerant bacterial strains were then tested for 1- aminocyclopropane-1-carboxylic acid (ACC) deaminase activity. Twenty-five of these were found to be positive, and to be exhibiting significantly varying levels of activity. 16S rRNA gene sequencing analyses of the 36 halotolerant strains showed that they belong to 10 different bacterial genera: Bacillus, Brevibacterium, Planococcus, Zhihengliuella, Halomonas, Exiguobacterium, Oceanimonas, Corynebacterium, Arthrobacter, and Micrococcus. Inoculation of the 14 halotolerant bacterial strains to ameliorate salt stress (150 mM NaCl) in canola plants produced an increase in root length of between 5.2% and 47.8%, and dry weight of between 16.2% and 43%, in comparison with the uninoculated positive controls. In particular, three of the bacteria, Brevibacterium epidermidis RS15, Micrococcus yunnanensis RS222, and Bacillus aryabhattai RS341, all showed more than 40% increase in root elongation and dry weight when compared with uninoculated saltstressed canola seedlings. These results indicate that certain halotolerant bacteria, isolated from coastal soils, have a real potential to enhance plant growth under saline stress, through the reduction of ethylene production via ACC deaminase activity.

Nanocurcumin: A Promising Candidate for Therapeutic Applications
Adhimoolam Karthikeyan, N. Senthil, Taesun Min
2020· Frontiers in Pharmacology401doi:10.3389/fphar.2020.00487

. It has drawn immense attention in recent years for its variety of biological and pharmacological action. However, its low water solubility, poor bioavailability, and rapid metabolism represent major drawbacks for its successful therapeutic applications. Hence, researchers have attempted to enhance the biological and pharmacological activity of curcumin and overcome its drawbacks by efficient delivery systems, particularly nanoencapsulation. Research efforts so far and data from the available literature have shown a satisfactory potential of nanorange formulations of curcumin (Nanocurcumin), it increases all the biological and pharmacological benefits of curcumin, which was not significantly possible earlier. For the synthesis of nanocurcumin, an array of techniques has been developed and each technique has its own advantages and individual characteristics. The two most popular and effective techniques are ionic gelation and antisolvent precipitation. So far, many curcumin nanoformulations have been developed to enhance curcumin delivery, thereby overcoming the low therapeutic effects. However, most of the nanoformulation of curcumin remained at the concept level evidence, thus, several questions and challenges still exist to recommend the nanocurcumin as a promising candidate for therapeutic applications. In this review, we discuss the different curcumin nanoformulation and nanocurcumin implications for different therapeutic applications as well as the status of ongoing clinical trials and patents. We also discuss the research gap and future research directions needed to propose curcumin as a promising therapeutic candidate.

Role of inorganic and organic soil amendments on immobilisation and phytoavailability of heavy metals: a review involving specific case studies
Nanthi Bolan, V. P. Duraisamy
2003· Australian Journal of Soil Research388doi:10.1071/sr02122

Soil is not only considered as a 'source' of nutrients for plant growth, but also as a 'sink' for the removal of contaminants from industrial and agricultural waste materials. The origin of heavy metal contamination of soils may be anthropogenic as well as geogenic. With greater public awareness of the implications of contaminated soils on human and animal health, there has been increasing interest amongst the scientific community in developing cost-effective and community-acceptable remediation technologies for contaminated sites. Unlike organic contaminants, most metals do not undergo microbial or chemical degradation, thereby resulting in their accumulation in soils. The mobilisation of metals in soils for plant uptake and leaching to groundwater can, however, be minimised through chemical and biological immobilisation. Recently there has been increasing interest in the immobilisation of metals using a range of inorganic compounds, such as lime and phosphate (P) compounds, and organic compounds, such as 'exceptional quality' biosolids. In this review paper, the results from selected New Zealand studies on the potential value of a range of soil amendments (phosphate compounds, liming materials, and biosolids) in the immobilisation of cadmium (Cd), chromium (Cr), and copper (Cu) is discussed in relation to remediation of contaminated soils. These case studies have indicated that lime is effective in reducing the phytoavailability of Cd and Cr(III), phosphate compounds are effective for Cd, and organic amendments are effective for Cu and Cr(VI). The mechanisms proposed for the immobilisation and consequent reduction in the phytoavailability of metals by the soil amendments include: enhanced metal adsorption through increased surface charge (e.g. phosphate-induced metal adsorption), increased formation of organic and inorganic metal complexes (e.g. cadmium-phosphate complex and copper-organic matter complex), precipitation of metals (e.g. chromic hydroxide), and reduction of metals from higher valency mobile form to lower valency immobile form [e.g. Cr(VI) to Cr(III)]. These case studies indicated that since bioavailability is the key factor for remediation technologies, chemical or biological immobilisation of metals may be a preferred option.

Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding
Mariafe Calingacion, Alice G. Laborte, Andrew Nelson, Adoracion P. Resurreccion +4 more
2014· PLoS ONE333doi:10.1371/journal.pone.0085106

With the ever-increasing global demand for high quality rice in both local production regions and with Western consumers, we have a strong desire to understand better the importance of the different traits that make up the quality of the rice grain and obtain a full picture of rice quality demographics. Rice is by no means a 'one size fits all' crop. Regional preferences are not only striking, they drive the market and hence are of major economic importance in any rice breeding / improvement strategy. In this analysis, we have engaged local experts across the world to perform a full assessment of all the major rice quality trait characteristics and importantly, to determine how these are combined in the most preferred varieties for each of their regions. Physical as well as biochemical characteristics have been monitored and this has resulted in the identification of no less than 18 quality trait combinations. This complexity immediately reveals the extent of the specificity of consumer preference. Nevertheless, further assessment of these combinations at the variety level reveals that several groups still comprise varieties which consumers can readily identify as being different. This emphasises the shortcomings in the current tools we have available to assess rice quality and raises the issue of how we might correct for this in the future. Only with additional tools and research will we be able to define directed strategies for rice breeding which are able to combine important agronomic features with the demands of local consumers for specific quality attributes and hence, design new, improved crop varieties which will be awarded success in the global market.

Seed Priming: A Feasible Strategy to Enhance Drought Tolerance in Crop Plants
Marthandan Vishvanathan, Rathnavel Geetha, K. Kumutha, Vellaichamy Gandhimeyyan Renganathan +2 more
2020· International Journal of Molecular Sciences318doi:10.3390/ijms21218258

Drought is a serious threat to the farming community, biasing the crop productivity in arid and semi-arid regions of the world. Drought adversely affects seed germination, plant growth, and development via non-normal physiological processes. Plants generally acclimatize to drought stress through various tolerance mechanisms, but the changes in global climate and modern agricultural systems have further worsened the crop productivity. In order to increase the production and productivity, several strategies such as the breeding of tolerant varieties and exogenous application of growth regulators, osmoprotectants, and plant mineral nutrients are followed to mitigate the effects of drought stress. Nevertheless, the complex nature of drought stress makes these strategies ineffective in benefiting the farming community. Seed priming is an alternative, low-cost, and feasible technique, which can improve drought stress tolerance through enhanced and advanced seed germination. Primed seeds can retain the memory of previous stress and enable protection against oxidative stress through earlier activation of the cellular defense mechanism, reduced imbibition time, upsurge of germination promoters, and osmotic regulation. However, a better understanding of the metabolic events during the priming treatment is needed to use this technology in a more efficient way. Interestingly, the review highlights the morphological, physiological, biochemical, and molecular responses of seed priming for enhancing the drought tolerance in crop plants. Furthermore, the challenges and opportunities associated with various priming methods are also addressed side-by-side to enable the use of this simple and cost-efficient technique in a more efficient manner.

Genetic Analysis of Drought Resistance in Rice by Molecular Markers
R. Chandra Babu, Bay Nguyen, Varapong Chamarerk, P. Shanmugasundaram +4 more
2003· Crop Science317doi:10.2135/cropsci2003.1457

Drought stress is the major constraint to rice ( Oryza sativa L.) production and yield stability in rainfed ecosystems. Identifying genomic regions contributing to drought resistance will help develop rice cultivars suitable for rainfed regions through molecular marker assisted breeding. Quantitative trait loci (QTLs) linked to plant water stress indicators, phenology and production traits under irrigated and drought stress conditions were mapped by means of a doubled‐haploid (DH) population of 154 rice lines from the cross CT9993‐5‐10‐1‐M/IR62266‐42‐6‐2. The DH lines were subjected to water stress before anthesis in three field experiments at two locations. The DH lines showed significant variation for plant water stress indicators, phenology, plant biomass, yield and yield components under irrigated control and water stress. A total of 47 QTLs were identified for various plant water stress indicators, phenology, and production traits under control and water stress conditions in the field, which individually explained 5 to 59% of the phenotype variation. A region was identified on chromosome 4 that harbored major QTLs for plant height, grain yield, and number of grains per panicle under drought stress. By comparing the coincidence of QTLs with specific traits, we also genetically dissected the nature of association of root traits and capacity for osmotic adjustment with rice production under drought. Root traits had positive correlations with yield and yield components under drought stress. This study demonstrated that the region RG939‐RG476‐RG214 on chromosome 4 identified for root‐related drought resistance component QTLs also had pleiotropic effects on yield traits under stress. Consistent QTLs for drought resistance traits and yield under stress were detected and might be useful for marker‐assisted selection for rainfed rice improvement.

Plant-based proteins and their multifaceted industrial applications
Manoj Kumar, Maharishi Tomar, Sneh Punia, Jyoti Dhakane‐Lad +4 more
2021· LWT297doi:10.1016/j.lwt.2021.112620

Proteins serve as an imperative macronutrient in human nutrition and well-being. Their nutritional quality substantially varies with their digestibility, amino acid profile, bioavailability, processing and purity. From a nutritional viewpoint, the ideal integration of proteins from diverse plant sources can supply an adequate amount of essential amino acids to fulfil human health needs. The use of plant-derived proteins has recently gained momentum due to their multifaceted edible and nonedible applications and their biodegradable nature. The use of plant proteins will be essential when animal-derived proteins fail to satisfy the requirements of the global population. Physicochemical properties, structural properties, amino acid composition and functional attributes of plant-based proteins are of great interest to the food and processing industries. This review presents various applications of plant-based proteins as food supplements in human nutrition, edible coating materials for fruits and vegetables, emulsifiers in numerous food products, sources of bioactive peptides in nutra- and pharmaceutical products, hydrogels in drug delivery and nonedible applications as wood adhesives. Distinct biological properties of proteins obtained from plant sources such as peanuts, soybeans, kidney beans, rice, quinoa, sunflowers, cottonseed, camelina, maize and others are also conceptually discussed based on their diverse applications in human health and nutrition.

High-Temperature Stress Alleviation by Selenium Nanoparticle Treatment in Grain Sorghum
M. Djanaguiraman, N. Belliraj, Stefan H. Bossmann, P. V. Vara Prasad
2018· ACS Omega292doi:10.1021/acsomega.7b01934

Se-NPs during the booting stage of sorghum grown under HT stress stimulated the antioxidant defense system by enhancing antioxidant enzymes activity. Furthermore, it decreased the concentration of signature oxidants. Se-NPs facilitated higher levels of unsaturated phospholipids. Se-NPs under HT stress improved the pollen germination percentage, leading to a significantly increased seed yield. The increased antioxidant enzyme activity and decreased content of oxidants in the presence of Se-NPs were greater under HT (38/28 °C) than under optimum temperature conditions (32/22 °C). In conclusion, Se-NPs can protect sorghum plants by enhanced antioxidative defense system under HT stress.

Identification of Physiological Traits Underlying Cultivar Differences in Drought Tolerance in Rice and Wheat
M. Lakshmi Praba, Jill E. Cairns, R. Chandra Babu, H.R. Lafïtte
2008· Journal of Agronomy and Crop Science288doi:10.1111/j.1439-037x.2008.00341.x

Abstract Rice is used as a model cereal to study drought response at the molecular level, with the goal of applying results to other cereals. To assess the relevance of results from rice to other species, the kinetics of drought development and plant response of tolerant and susceptible tropical rice ( Oryza sativa L.) and subtropical wheat ( Triticum aestivum L.) cultivars were compared under vegetative and reproductive stage drought in pot experiments. Water was withheld during reproductive stage until plant available soil moisture content was 30 % of field capacity (FC) or leaf wilting was observed, and then reapplied. Rice reached 30 % FC 9 days after withholding water and wheat after 13 days. Before rewatering, both species reached leaf water potentials of −12 bars and similarly low transpiration rates. Stress reduced leaf relative water content, leaf elongation and membrane stability. When water stress was imposed during reproductive stage, pollen fertility was most affected in wheat, while panicle exsertion and anther dehiscence were severely affected in rice. When water stress was imposed during vegetative stage, wheat was less affected to vegetative stage drought than rice. The nature of differences between tolerant and susceptible cultivars was similar for the two species. However, the differential growth habitats and growth rate of plants needs to be considered in these kinds of experiments.

Effects of high temperature stress during anthesis and grain filling periods on photosynthesis, lipids and grain yield in wheat
M. Djanaguiraman, Sruthi Narayanan, Eva Erdayani, P. V. Vara Prasad
2020· BMC Plant Biology273doi:10.1186/s12870-020-02479-0

Abstract Background Short episodes of high temperature (HT) stress during reproductive stages of development cause significant yield losses in wheat ( Triticum aestivum L.). Two independent experiments were conducted to quantify the effects of HT during anthesis and grain filling periods on photosynthesis, leaf lipidome, and yield traits in wheat. In experiment I, wheat genotype Seri82 was exposed to optimum temperature (OT; 22/14 °C; day/night) or HT (32/22 °C) for 14 d during anthesis stage. In experiment II, the plants were exposed to OT or HT for 14 d during the grain filling stage. During the HT stress, chlorophyll index, thylakoid membrane damage, stomatal conductance, photosynthetic rate and leaf lipid composition were measured. At maturity, grain yield and its components were quantified. Results HT stress during anthesis or grain filling stage decreased photosynthetic rate (17 and 25%, respectively) and grain yield plant − 1 (29 and 44%, respectively), and increased thylakoid membrane damage (61 and 68%, respectively) compared to their respective control (OT). HT stress during anthesis or grain filling stage increased the molar percentage of less unsaturated lipid species [36:5- monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG)]. However, at grain filling stage, HT stress decreased the molar percentage of more unsaturated lipid species (36:6- MGDG and DGDG). There was a significant positive relationship between photosynthetic rate and grain yield plant − 1 , and a negative relationship between thylakoid membrane damage and photosynthetic rate. Conclusions The study suggests that maintaining thylakoid membrane stability, and seed-set per cent and individual grain weight under HT stress can improve the photosynthetic rate and grain yield, respectively.

Decreased photosynthetic rate under high temperature in wheat is due to lipid desaturation, oxidation, acylation, and damage of organelles
M. Djanaguiraman, D. L. Boyle, Ruth Welti, S. V. Krishna Jagadish +1 more
2018· BMC Plant Biology259doi:10.1186/s12870-018-1263-z

BACKGROUND: High temperature is a major abiotic stress that limits wheat (Triticum aestivum L.) productivity. Variation in levels of a wide range of lipids, including stress-related molecular species, oxidative damage, cellular organization and ultrastructural changes were analyzed to provide an integrated view of the factors that underlie decreased photosynthetic rate under high temperature stress. Wheat plants of cultivar Chinese Spring were grown at optimum temperatures (25/15 °C, maximum/minimum) until the onset of the booting stage. Thereafter, plants were exposed to high temperature (35/25 °C) for 16 d. RESULTS: Compared with optimum temperature, a lower photosynthetic rate was observed at high temperature which is an interplay between thylakoid membrane damage, thylakoid membrane lipid composition, oxidative damage of cell organelle, and stomatal and non-stomatal limitations. Triacylglycerol levels were higher under high temperature stress. Polar lipid fatty acyl unsaturation was lower at high temperature, while triacylglycerol unsaturation was the same at high temperature and optimum temperature. The changes in lipid species indicates increases in activities of desaturating, oxidizing, glycosylating and acylating enzymes under high temperature stress. Cumulative effect of high temperature stress led to generation of reactive oxygen species, cell organelle and membrane damage, and reduced antioxidant enzyme activity, and imbalance between reactive oxygen species and antioxidant defense system. CONCLUSIONS: Taken together with recent findings demonstrating that reactive oxygen species are formed from and are removed by thylakoid lipids, the data suggest that reactive oxygen species production, reactive oxygen species removal, and changes in lipid metabolism contribute to decreased photosynthetic rate under high temperature stress.

Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species, the taxonomic reassignment of five Staphylococcus species to Mammaliicoccus gen. nov., and the formal assignment of Nosocomiicoccus to the family Staphylococcaceae
Munusamy Madhaiyan, Joseph S. Wirth, Venkatakrishnan Sivaraj Saravanan
2020· INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY255doi:10.1099/ijsem.0.004498

Phylogenetic analyses based on 16S rRNA gene sequences of members of the family Staphylococcaceae showed the presence of para- and polyphyletic genera. This finding prompted a thorough investigation into the taxonomy of the Staphylococcaceae family by analysing their core genome phylogeny complemented with genome-based indices such as digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity. The resulting data suggested the following proposals: Auricoccus indicus was reduced in taxonomic rank as a later heterotypic synonym of Abyssicoccus albus ; Staphylococcus petrasii subsp. jettensis as a later heterotypic synonym of Staphylococcus petrasii subsp. petrasii ; the unification of Staphylococcus aureus subsp. anaerobius and Staphylococcus aureus subsp. aureus as Staphylococcus aureus ; the unification of Staphylococcus carnosus subsp. utilis and Staphylococcus carnosus subsp. carnosus as Staphylococcus carnosus ; the unification of Staphylococcus saprophyticus subsp. bovis and Staphylococcus saprophyticus subsp. saprophyticus as Staphylococcus saprophyticus ; Staphylococcus succinis subsp. casei as the novel species Staphylococcus casei ; Staphylococcus schleiferi subsp. coagulans as the novel species Staphylococcus coagulans ; <jats:ext-link xml

Assessing in vitro solubilization potential of different zinc solubilizing bacterial (zsb) isolates
Venkatakrishnan Sivaraj Saravanan, Sudalayandy Rama Subramoniam, S. Anthoni Raj
2004· Brazilian Journal of Microbiology247doi:10.1590/s1517-83822004000100020

Zinc solubilizing ability of Bacillus sp. and Pseudomonas sp. was assessed using zinc oxide, zinc sulphide (sphalerite) and zinc carbonate in both plate and broth assays. ZSB-O-1 (Bacillus sp.) showed highest dissolution in the zinc sulphide (Sphalerite ore), with 2.80 cm of dissolution zone and 14.50 cm² of area in the plate assay and 13.60 mg kg-1 of zinc in the broth assay on the 15th day after inoculation. The ZSB-S-2 (Pseudomonas sp.) showed more solubilizing ability in the zinc oxide, with 3.30 cm clearing zone and 20.43 cm² area in the plate assay and 16.40 mg kg-1 of zinc in the broth assay over the same inoculation period. The isolate ZSB-S-4 (Pseudomonas sp.) has highest solubilizing potential in zinc carbonate with 6.20 cm of dissolution zone and 13.40 cm² area in the plate assay and 13.40 mg kg-1 of zinc in the broth assay. Thus, the solubilization potential varies among different cultures. The solubilization might be due to production of acids by the culture, since the pH of the culture broth has been shifted form 7.0-7.3 to 4.8-6.5 after 15 days of inoculation. The zinc tolerance limit for two cultures (ZSB-O-1 and ZSB-S-2) was studied and determined to be upto 100 mg kg-1 of zinc in the in vitro broth assay.

Source–sink dynamics and proteomic reprogramming under elevated night temperature and their impact on rice yield and grain quality
Wanju Shi, M. Raveendran, Hifzur Rahman, Jagadeesh Selvam +3 more
2012· New Phytologist243doi:10.1111/nph.12088

High night temperatures (HNTs) can reduce significantly the global rice (Oryza sativa) yield and quality. A systematic analysis of HNT response at the physiological and molecular levels was performed under field conditions. Contrasting rice accessions, N22 (highly tolerant) and Gharib (susceptible), were evaluated at 22°C (control) and 28°C (HNT). Nitrogen (N) and nonstructural carbohydrate (NSC) translocation from different plant tissues into grains at key developmental stages, and their contribution to yield, grain-filling dynamics and quality aspects, were evaluated. Proteomic profiling of flag leaf and spikelets at 100% flowering and 12 d after flowering was conducted, and their reprogramming patterns were explored. Grain yield reduction in susceptible Gharib was traced back to the significant reduction in N and NSC translocation after flowering, resulting in reduced maximum and mean grain-filling rate, grain weight and grain quality. A combined increase in heat shock proteins (HSPs), Ca signaling proteins and efficient protein modification and repair mechanisms (particularly at the early grain-filling stage) enhanced N22 tolerance for HNT. The increased rate of grain filling and efficient proteomic protection, fueled by better assimilate translocation, overcome HNT tolerance in rice. Temporal and spatial proteome programming alters dynamically between key developmental stages and guides future transgenic and molecular analysis targeted towards crop improvement.