Centro de Química de Évora

Industrial, agricultural, and domestic activities of humans have affected the environmental system, resulting in drastic problems such as global warming and the generation of wastewater containing high levels of pollutants. As water of good quality is a precious commodity and available in limited amounts, it has become highly imperative to treat wastewater for removal of pollutants. In addition, the rapid modernization of society has also led to the generation of huge amount of materials of little value that have no fruitful use. Such materials are generally considered as waste, and their disposal is a problem. Also, there are some materials that are available in nature that have little or no use. The utilization of all such materials as low-cost adsorbents for the treatment of wastewater may make them of some value. An effort has been made to give a brief idea of an approach to wastewater treatment, particularly discussing and highlighting in brief the low-cost alternative adsorbents with a view to utilizing these waste/low-cost materials.

This article reviews the different density functional theory (DFT) methods available in the literature for dealing with dispersion interactions and recent applications of DFT approaches including van der Waals corrections in the study of the interaction of atoms and molecules with several different surfaces. Focus is given to the interaction of atoms and molecules with metal, metal oxide and graphite surfaces or more complex systems. It will be shown that DFT approaches including van der Waals corrections present significant advances over standard exchange–correlation functionals for treating systems dominated by weak interactions.

The influence of carbon dioxide and steam as activating agents on the porosity development of activated carbons produced from walnut shells was investigated. The study was made covering a wide range of burnoff (12−76%) and employing different temperatures and times: in carbon dioxide activation, 850 °C varying the activation time in the range 60−480 min, and in steam activation, 700, 850, and 900 °C (for 30−120 min). It was found that the gasifying agent has a profound influence on the activated carbon porosity development. First, steam is more reactive and produces, in general, activated carbons with greater N 2 adsorption capacity. Second, the increase in the fraction of mesopores with activation time is more pronounced for steam. While steam generates micro-, meso-, and macropores from the early stages of the process, carbon dioxide produces highly microporous carbons, with broadening of the microporosity only for long activation times.

Development of quantitative theory of adsorption-induced deformation is important, e.g., for enhanced coalbed methane recovery by CO2 injection. It is also promising for the interpretation of experimental measurements of elastic properties of porous solids. We study deformation of mesoporous silica by n-pentane adsorption. The shape of experimental strain isotherms for this system differs from the shape predicted by thermodynamic theory of adsorption-induced deformation. We show that this difference can be attributed to the difference of disjoining pressure isotherm, responsible for the solid-fluid interactions. We suggest the disjoining pressure isotherm suitable for n-pentane adsorption on silica and derive the parameters for this isotherm from experimental data of n-pentane adsorption on nonporous silica. We use this isotherm in the formalism of macroscopic theory of adsorption-induced deformation of mesoporous materials, thus extending this theory for the case of weak solid-fluid interactions. We employ the extended theory to calculate solvation pressure and strain isotherms for SBA-15 and MCM-41 silica and compare it with experimental data obtained from small-angle X-ray scattering. Theoretical predictions for MCM-41 are in good agreement with the experiment, but for SBA-15 they are only qualitative. This deviation suggests that the elastic modulus of SBA-15 may change during pore filling.

Universal mechanisms of adsorption and capillary condensation of toluene and nitrogen on ordered MCM-41 and PHTS materials are studied by means of high-resolution experiments and Monte Carlo molecular simulations. A molecular simulation model of toluene adsorption in silica nanopores, which accounts for surface heterogeneity, and a hybrid molecular-macsroscopic method for pore size distribution (PSD) calculations have been developed. For a range of reference materials, the PSD results obtained from toluene isotherms are consistent with the results of nitrogen adsorption using the nonlocal density functional theory method.

Nitrobenzoxadiazole (NBD)-labeled lipids are popular fluorescent membrane probes. However, the understanding of important aspects of the photophysics of NBD remains incomplete, including the observed shift in the emission spectrum of NBD-lipids to longer wavelengths following excitation at the red edge of the absorption spectrum (red-edge excitation shift or REES). REES of NBD-lipids in membrane environments has been previously interpreted as reflecting restricted mobility of solvent surrounding the fluorophore. However, this requires a large change in the dipole moment (Δμ) of NBD upon excitation. Previous calculations of the value of Δμ of NBD in the literature have been carried out using outdated semi-empirical methods, leading to conflicting values. Using up-to-date density functional theory methods, we recalculated the value of Δμ and verified that it is rather small (∼2 D). Fluorescence measurements confirmed that the value of REES is ∼16 nm for 1,2-dioleoyl-sn-glycero-3-phospho-l-serine-N-(NBD) (NBD-PS) in dioleoylphosphatidylcholine vesicles. However, the observed shift is independent of both the temperature and the presence of cholesterol and is therefore insensitive to the mobility and hydration of the membrane. Moreover, red-edge excitation leads to an increased contribution of the decay component with a shorter lifetime, whereas time-resolved emission spectra of NBD-PS displayed an atypical blue shift following excitation. This excludes restrictions to solvent relaxation as the cause of the measured REES and TRES of NBD, pointing instead to the heterogeneous transverse location of probes as the origin of these effects. The latter hypothesis was confirmed by molecular dynamics simulations, from which the calculated heterogeneity of the hydration and location of NBD correlated with the measured fluorescence lifetimes/REES. Globally, our combination of theoretical and experiment-based techniques has led to a considerably improved understanding of the photophysics of NBD and a reinterpretation of its REES in particular.

Due to their sensitivity and versatility, the use of fluorescence techniques in membrane biophysics is widespread. Because membrane lipids are non-fluorescent, extrinsic membrane probes are widely used. However, the behaviour of these probes when inserted in the bilayer is often poorly understood, and it can be hard to distinguish between legitimate membrane properties and perturbation resulting from probe incorporation. Atomistic molecular dynamics simulations present a convenient way to address these issues and have been increasingly used in recent years in this context. This article reviews the application of molecular dynamics to the study of fluorescent membrane probes, focusing on recent work with complex design fluorophores and ordered bilayer systems.

Essential oils (EOs) from Eucalyptus globulus Labill. ssp. globulus and from Mediterranean autochthonous aromatic plants - Thymus mastichina L., Mentha pulegium L., Rosmarinus officinalis L., Calamintha nepeta (L.) Savi ssp. nepeta, Cistus ladanifer L., Foeniculum vulgare L., Dittrichia viscosa (L.) Greuter ssp. viscosa - were extracted by hydrodistillation and characterized by GC-FID and NMR spectroscopy. EOs were evaluated for antimicrobial properties against several bacterial strains, using diverse methods, namely, the agar disc-diffusion method, the microdilution method, the crystal violet assay and the Live/Dead staining for assessment of biofilm formation. Potential synergy was assessed by a checkerboard method. EOs of R. officinalis and C. ladanifer showed a predominance in monoterpene hydrocarbons (> 60%); EOs of C. nepeta, M. pulegium, T. mastichina, E. globulus and F. vulgare were rich in oxygenated monoterpenes (62 - 96%) whereas EO of D. viscosa was mainly composed of oxygenated sesquiterpenes (54%). All EOs showed antimicrobial activity; M. pulegium and E. globulus generally had the strongest antimicrobial activity. EO of C. nepeta was the most promising in hampering the biofilm formation. The combinations D. viscosa/C. nepeta and E. globulus/T. mastichina were synergistic against Staphylococcus aureus. These results support the notion that EOs from the aromatic plants herein reported should be further explored as potential pharmaceuticals and/or food preservatives.

Adsorption–desorption isotherms of aromatic (mesitylene and toluene) and aliphatic (methylcyclohexane, neopentane and n-pentane) hydrocarbons were measured on ordered mesoporous materials, including MCM-41, MCM-48, SBA-15, SBA-16 and MCF silicas, a periodic mesoporous organosilica and a CMK-3 carbon, in order to evaluate the effect of the adsorbent characteristics on the organic compounds adsorption behaviour. A clear separation between aliphatic and aromatic hydrocarbons is observed at low p/po for the materials having pores accessible by narrow openings. The presence of narrow pore openings causes an increase in the volume adsorbed of mesitylene, toluene, methylcyclohexane and n-pentane prior to capillary condensation that does not occur for neopentane. The increase of the hydrophobicity and change of the surface structure, resulting from the incorporation of chloromethyl groups on the silica walls, causes the p/po at which the aromatic hydrocarbons condense to increase while the introduction of aromatic rings into the pore walls has a less significant effect on the condensation pressures. However, at low p/po, all the hydrocarbons have higher affinity for the periodic mesoporous organosilica surface than for the pure silica or silica with chloromethyl groups surfaces, while these lower the affinity of the aromatic hydrocarbons. Good estimates of pore size (Dp) are obtained using the classical Kelvin equation from the mesitylene, toluene and methylcyclohexane adsorption data, for spheroidal pores of at least ∼20 nm. With n-pentane this occurs for pores of ∼30 nm while neopentane underestimates Dp values even for pores as large as these, although to a lesser extent than nitrogen.

Diabetes Mellitus is now a prevalent disease in both developed and underdeveloped countries, being a major cause of morbidity and mortality. Overweight/obesity and hypertension are potentially modifiable risk factors for diabetes mellitus, and persist during the course of the disease. Despite the evidence from large controlled trials establishing the benefit of intensive diabetes management in reducing microvasculars and macrovasculars complications, high proportions of patients remain poorly controlled. Poor and inadequate glycemic control among patients with Type 2 diabetes constitutes a major public health problem and a risk factor for the development of diabetes complications. In clinical practice, optimal glycemic control is difficult to obtain on a long-term basis, once the reasons for feebly glycemic control are complex. Therefore, this work will focus on the development of a diagnosis support system, in terms of its knowledge representation and reasoning procedures, under a formal framework based on Logic Programming, complemented with an approach to computing centred on Artificial Neural Networks, to evaluate the Diabetes states and the Degree-of-Confidence that one has on such a happening.

Flow Chemistry is a revolutionary field in Organic Chemistry. By changing the conventional methods and apparatus applied in the chemical synthesis, flow chemistry emerges as a game changer for organic synthesis laboratories, in both academia and industries. Considered as a sustainable practice, flow processes play an important role in the development of fine chemical products and in drug discovery development programs. This work aims to review the recent contributions on heterocyclic synthesis under continuous‐flow conditions, focusing in heterocycle ring formation and highlighting some of the most recent examples found in the literature, as well as some synthetic strategies aiming for the flow preparation of high‐value chemical products, such as APIs and agrochemicals.

Sifuvirtide, a 36 amino acid negatively charged peptide, is a novel and promising HIV fusion inhibitor, presently in clinical trials. Because of the aromatic amino acid residues of the peptide, its behavior in aqueous solution and the interaction with lipid-membrane model systems (large unilammelar vesicles) were studied by using mainly fluorescence spectroscopy techniques (both steady-state and time-resolved). No significant aggregation of the peptide was observed with aqueous solution. Various biological and nonbiological lipid-membrane compositions were analyzed, and atomic force microscopy was used to visualize phase separation in several of those mixtures. Results showed no significant interaction of the peptide, neither with zwitterionic fluid lipid membranes (liquid-disordered phase), nor with cholesterol-rich membranes (liquid-ordered phase). However, significant partitioning was observed with the positively charged lipid models (K(p) = (2.2 +/- 0.3) x 10(3)), serving as a positive control. Fluorescence quenching using Förster resonance acrylamide and lipophilic probes was carried out to study the location of the peptide in the membrane models. In the gel-phase DPPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine) membrane model, an adsorption of the peptide at the surface of these membranes was observed and confirmed by using Förster resonance energy-transfer experiments. These results indicate a targeting of the peptide to gel-phase domains relatively to liquid-disordered or liquid-ordered phase domains. This larger affinity and selectivity toward the more rigid areas of the membranes, where most of the receptors are found, or to viral membrane, may help explain the improved clinical efficiency of sifuvirtide, by providing a local increased concentration of the peptide at the fusion site.

Abstract The concentration and antioxidant activity of the known phenolics macluraxanthone, rutin, chlorogenic acid, and psoralen present in M. pomifera, F. carica, and F. elastica extracts were determined to evaluate the plant extracts potency as new antioxidant suppliers. The quantification of the compounds was obtained by HPLC-DAD. The antioxidant activity of plant extracts and compounds was evaluated using DPPH and ABTS methods. The results seem to indicate that these extracts can be promising as new antioxidant suppliers, particularly F. carica and F. elastica leaves because only about 30% and about 50%, respectively, of the total activity was due to the phenolics determined.

As part of a systematic study of the thermophysical properties of two important classes of fluorinated organic compounds (perfluoroalkanes and perfluoroalkylalkanes), viscosity measurements of four n-perfluoroalkanes and five perfluoroalkylalkanes have been carried out at atmospheric pressure and over a wide range of temperatures (278-353 K). From the experimental results the contribution to the viscosity from the CF(2) and CF(3) groups as a function of temperature have been estimated. Similarly, the contributions for CH(2) and CH(3) groups in n-alkanes have been determined using literature data. For perfluoroalkylalkanes, the viscosity results were interpreted in terms of the contributions of the constituent CF(2), CF(3), CH(2), and CH(3) groups, the deviations from ideality on mixing hydrogenated and fluorinated chains, and the contribution due to the formation of the CF(2)-CH(2) bond. A standard empirical group contribution method (Sastri-Rao method) has also been used to estimate the viscosities of the perfluoroalkylalkanes. Finally, to obtain molecular level insight into the behavior of these molecules, all-atom molecular dynamics simulations have been performed and used to calculate the densities and viscosities of the perfluoroalkylalkanes studied. Although both quantities are underestimated compared to the experimental data, with the viscosities showing the largest deviations, the trends observed in the experimental viscosities are captured.

Abstract This is the first account of a successful, Pd II ‐catalysed enantioselective addition of phenylboronic acid to electron‐deficient N ‐tosylarylimines by using chiral diphosphane ligands. A number of commercial diphosphane ligands were screened. Despite moderate to good yields, ee values of 99 % could be achieved with MeDuPhos. Novel Rh I catalysts were also screened, and ee values as high as 74 % could be obtained.

Intradiffusion coefficients of 2,2,2-trifluoroethanol in water have been measured by the pulsed field gradient (PFG)-NMR spin–echo technique as a function of temperature and composition on the dilute alcohol region. The measurements extend the range of compositions already studied in the literature and, for the first time, include the study of the temperature dependence. At the same time, intradiffusion coefficients of 2,2,2-trifluoroethanol, 2,2,3,3,3-pentafluoropropan-1-ol, and 2,2,3,3,4,4,4-heptafluorobutan-1-ol in water were obtained by computer simulation (molecular dynamics) as a function of composition and temperature. The intradiffusion coefficients of 2,2,2-trifluoroethanol in water obtained by simulation agree with the experimental results, while those of 2,2,3,3,3-pentafluoropropan-1-ol and 2,2,3,3,4,4,4-heptafluorobutan-1-ol are the first estimation of this property for those systems. The molecular dynamics simulations were also used to calculate the intradiffusion coefficients of perfluorooctanesulfonic acid and perfluorooctanoic acid in water at infinite dilution as a function of temperature, which are very difficult to obtain experimentally because of the very low solubility of these substances. From the dependence of the intradiffusion coefficients on temperature, diffusion activation energies were estimated for all the solutes in water.

This paper provides a contribution to FTIR analysis of calcium sulphate‐based grounds of paintings when a mixture of compounds with different degrees of hydration is present. The study is based on the analysis with that technique, electron microscopy coupled with energy‐dispersive X ‐ray spectrometry and X ‐ray diffraction of both the grounds of 16th‐century P ortuguese paintings and reference samples prepared with anhydrite and calcium sulphate dihydrate bound in an animal glue solution. It is shown that the interpretation of the degree of hydration of calcium sulphate ground samples using FTIR cannot be based solely on the study of the hydroxyl bands, as is usual in routine work, but that small deviations of the S – O vibration bands are an important indicator of the presence of anhydrite in the grounds.

For the activated carbon (AC) production, we used the most common industrial and consumer solid waste, namely polyethyleneterephthalate (PET), alone or blended with other synthetic polymer such polyacrylonitrile (PAN). By mixing PET, with PAN, an improvement in the yield of the AC production was found and the basic character and some textural and chemical properties were enhanced. The PET–PAN mixture was subjected to carbonisation, with a pyrolysis yield of 31.9%, between that obtained with PET (16.9%) or PAN (42.6%) separately. The AC revealed a high surface area (1400, 1230 and 1117 m2 g−1) and pore volume (0.46, 0.56 and 0.50 cm3 g−1), respectively, for PET, PAN and PET–PAN precursors. Selected ACs were successfully tested for 4-chloro-2-methylphenoxyacetic acid (MCPA) and diuron removal from the liquid phase, showing a higher adsorption capacity (1.7 and 1.2 mmol g−1, respectively, for MCPA and diuron) and good fits with the Langmuir (PET) and Freundlich equation (PAN and PET–PAN blend). With MCPA, the controlling factor to the adsorption capacity was the porous volume and the average pore size. Concerning diuron, the adsorption was controlled essentially by the external diffusion. A remarkable result is the use of different synthetic polymers wastes, as precursors for the production of carbon materials, with high potential application on the pesticides removals from the liquid phase.

The Health Surveillance Program was established by the Regional Health Authority of Alentejo to control the quality of public water supply. This authority divides the water quality parameters into three distinct groups, namely P1 (pH and conductivity), P2 (nitrate and manganese) and P3 (sodium and potassium), for which the sampling frequency is dissimilar. Thus, the development of formal models is essential to predict the chemical parameters included in group P2 and included in group P3,for which the sampling frequency is lower, based on the chemical parameters included in group P1. In the present work, artificial neural networks (ANNs) were used to predict the concentration of nitrate, manganese, sodium and potassium from pH and conductivity. Different network structures have been elaborated and evaluated using the mean absolute deviation and the mean squared error. The ANN selected to predict the concentration of nitrate, sodium and potassium from pH and conductivity has a 2-18-14-3 topology while the network selected to predict the concentration of nitrate and manganese has a 2-19-10-2 topology. A good match between the observed and predicted values was observed with the R2 values varying in the range 0.9960–0.9989 for the training set and 0.9993–0.9952 for the test set.

Nitrobenzoxadiazole (NBD)-labeled sterols are commonly used as fluorescent cholesterol analogues in membrane biophysics. However, some experimental reports have questioned their ability to emulate the behavior of cholesterol in phospholipid bilayers. For the purpose of a detailed clarification of this matter, atomistic molecular dynamics simulations of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) bilayers, containing either cholesterol or one of two fluorescent cholesterol analogues, 22-NBD-cholesterol or 25-NBD-cholesterol, were carried out. It is found that these sterol probes tend to adopt conformations in which their tail-labeled fluorophore is oriented toward the lipid/water interface, with a location similar to that observed in molecular dynamics simulations of other NBD probes. This implies that in these molecules the long sterol axis is no longer aligned with the membrane normal, and preferentially adopts orientations approximately parallel to the bilayer plane. In turn, these stretched conformations, together with NBD-POPC atomic interactions, lead to slowed-down lateral diffusion of both fluorescent sterols, compared to cholesterol. From computation of the deuterium order parameter and acyl chain tilts of POPC chains for varying POPC-sterol distance, it is observed that the local ordering effect of sterol is altered in both fluorescent derivatives. In agreement with reported experimental data, both fluorescent sterols are able to increase the order of POPC at 20 mol % concentration (as some molecules adopt an upright conformation, possibly related to formation of transbilayer aggregates), albeit to a smaller extent to that of cholesterol. Altogether, this study indicates that both 22- and 25-NBD-cholesterol are unable to mimic the most important features of cholesterol's behavior in lipid bilayers.