A promoter-level mammalian expression atlas

R. R. Forrest, Alistair; Kawaji, Hideya; de Hoon, Michiel; Lassmann, Timo; Lizio, Marina; Itoh, Masayoshi; Bertin, Nicolas; Arner, Erik; Plessy, Charles; Vitezic, Morana; Severin, Jessica; Ishizu, Yuri; Arakawa, Takahiro; Bonetti, Alessandro; Maxwell Burroughs, A.; Fukuda, Shiro; Furuno, Masaaki; Harbers, Matthias; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Takehiro; Hori, Fumi; Kaczkowski, Bogumił; Kaida, Kaoru; Kaiho, Ai; Kajiyama, Kazuhiro; Kanamori-Katayama, Mutsumi; Katayama, Shintaro; Kato, Sachi; Kawashima, T; Kojima, Miki; Kondo, Naoto; Kubosaki, Atsutaka; Tae-Jun Kwon, Andrew; Manabe, Ri‐Ichiroh; Motakis, Efthymios; Murata, Mitsuyoshi; Nagao-Sato, Sayaka; Nakazato, Kenichi; Ninomiya, Noriko; Nishiyori, Hiromi; Noma, Shohei; Ohmiya, Hiroko; A. Ramilowski, Jordan; Roy, Sugata; Saijyo, Eri; Saka, Akiko; Sakai, Mizuho; Saxena, Alka; Sengstag, Thierry; Shimoji, Hisashi; W. Shin, Jay; Simon, Christophe; Suzuki, Masanori; Suzuki, Naoko; Tagami, Michihira; Takahashi, Naoko; Watanabe, Shoko; Yoshida, Shigehiro; Suzuki, Harukazu; Daub, C; Kawai, J; Carninci, Piero; Hayashizaki, Yoshihide; Kasukawa, Takeya; Rehli, Michael; Schmidl, Christian; Edinger, Matthias; Kenneth Baillie, J.; Fairbairn, Lynsey; E Fisher, Malcolm; Joshi, Anagha; Summers, Kim; C. Freeman, Tom; A. Hume, David; Haberle, Vanja; Lenhard, Boris; V. Kulakovskiy, Ivan; J. Makeev, Vsevolod; A. Medvedeva, Yulia; V. Favorov, Alexander; S. Kasianov, Artem; E. Vorontsov, Ilya; Andersson, Robin; Jørgensen, Mette; Chen, Yun; Hoof, Ilka; Li, Kang; Lilje, Berit; Zhao, Xiaobei; Sandelin, Albin; Mungall, Chris; F. Meehan, Terrence; Schmeier, Sebastian; Schaefer, Ulf; Alam, Intikhab; A. C. Archer, John; R. Janković, Boris; Marchand, Benoı̂t; Pain, Arnab; Rashid, Mamoon; B. Bajić, Vladimir; Dimont, Emmanuel; Altschuler, Gabriel; J. Ho Sui, Shannan; A Hofmann, O; Hide, Winston; Huminiecki, Łukasz; A. Semple, Colin; S. Young, Robert; Rennie, Sarah; Meynert, Alison; Prendergast, James; S. Taylor, Martin; Francescatto, Margherita; Rizzu, Patrizia; Heutink, Peter; Albanese, Davide; Chierici, Marco; Furlanello, Cesare; Jurman, Giuseppe; Roncador, Marco; Arner, Peter; Mejhert, Niklas; Babina, Magda; Guhl, Sven; J. Balwierz, Piotr; van Nimwegen, Erik; G Beckhouse, Anthony; Briggs, James; J Hitchens, Kelly; A. Ovchinnikov, Dmitry; Vijayan, Dipti; A. Wells, Christine; J. Wolvetang, Ernst; Blumenthal, Antje; Pradhan-Bhatt, Swati; A. Blake, Judith; Kenna, Tony; Bodega, Beatrice; Orlando, Valerio; Brombacher, Frank; Guler, Reto; Savvi, Suzana; Schwegmann, Anita; Califano, Andrea; Shimoni, Yishai; V. Cannistraci, Carlo; Ravasi, Timothy; Carbajo, Daniel; C. Mar, Jessica; Ciani, Yari; Dalla, Emiliano; Piazza, Silvano; Schneider, Claudio; Verardo, Roberto; Clevers, Hans; van der Wetering, Marc; Davis, Carrie; Gingeras, T; Detmar, Michael; Krampitz, Sarah; D. Diehl, Alexander; Dohi, Taeko; I. Kawamura, Yuki; Drabløs, Finn; Beck Rye, Morten; S.B. Edge, Albert; S. Kempfle, Judith; Ekwall, Karl; Kere, Juha; Lennartsson, Andreas; Persson, Helena; Endoh, Mitsuhiro; Furusawa, Jun-ichi; Ikawa, Tomokatsu; Kawamoto, Hiroshi; Koseki, Haruhiko; Koyasu, Shigeo; Moro, Kazuyo; Ohno, Hiroshi; Okada, Mariko; Enomoto, Hideki; Morimoto, Mitsuru; Sheng, Guojun; Yonekura, Yohei; Fagiolini, Michela; Fang, Hai; Gough, Julian; J. L. Rackham, Owen; C. Farach‐Carson, Mary; J. Faulkner, Geoffrey; C. Frith, Martin; Fujita, Rie; Satoh, Hironori; Takai, Jun; Yamamoto, Masayuki; Geijtenbeek, TBH; Berg, Linda; P. Gibson, Andrew; F. J. Laros, Jeroen; Schultes, E; A.C. t Hoen, Peter; Tatum, Zuotian; Thompson, Mark; Goldowitz, Dan; J Ha, Thomas; Mathelier, Anthony; W. Wasserman, Wyeth; G. Zhang, Peter; Gustincich, Stefano; Zucchelli, S.; Hamaguchi, Masahide; Morikawa, Hiromasa; Ohkura, Naganari; Sakaguchi, Shimon; Hara, Mitsuko; Kojima, Soichi; Herlyn, Meenhard; Swoboda, Rolf; E. Zabierowski, Susan; Iida, Kei; Kawaguchi, Shuji; Toyoda, Tetsuro; Jia, Hui; Lipovich, Leonard; J. Wood, Emily; Kai, Chieko; Nakamura, Toshiyuki; Sato, Hiroki; Sugiyama, Takaaki; Yoneda, Misako; M. Khachigian, Levon; Patrikakis, Margaret; Kitamura, Toshio; Nakahara, Fumio; Peter Klinken, S.; N. Winteringham, Louise; J. Knox, Alan; Suk Lee, Won; Mackay‐Sim, Alan; Mizuno, Yosuke; Nakachi, Yutaka; Okazaki, Yasushi; Morais, David; Motohashi, Hozumi; L. Mummery, Christine; Passier, Robert; Nakamura, Yukio; Nozaki, Tadasuke; Toyoda, Hiroo; Ogishima, Soichi; Tanaka, Hiroshi; Ohshima, Mitsuhiro; Sajantila, Antti; G. Schulze-Tanzil, Gundula; Dt, Sugiyama; Tatsukawa, Hideki; Valen, Eivind; Yamaguchi, Yoko

doi:10.1038/nature13182

Public

A promoter-level mammalian expression atlas

Published in Nature • Mar 1, 2014

Authors:

Alistair R. R. Forrest

Hideya Kawaji

Michiel de Hoon

Abstract

Regulated transcription controls the diversity, developmental pathways and spatial organization of the hundreds of cell types that make up a mammal. Using single-molecule cDNA sequencing, we mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tiss...

Subject

Biology

Promoter

Transcription factor

Research Assistant

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