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Cutadapt removes adapter sequences from high-throughput sequencing reads

Published in EMBnet journal • May 2, 2011
Authors:
Marcel Martin

Abstract

When small RNA is sequenced on current sequencing machines, the resulting reads are usually longer than the RNA and therefore contain parts of the 3' adapter. That adapter must be found and removed error-tolerantly from each read before read mapping. Previous solutions are either hard to use or do n...

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