TM-align: a protein structure alignment algorithm based on the TM-score

Zhang, Yang

doi:10.1093/nar/gki524

Public

TM-align: a protein structure alignment algorithm based on the TM-score

Published in Nucleic Acids Research • Apr 11, 2005

Authors:

Yang Zhang

Abstract

We have developed TM-align, a new algorithm to identify the best structural alignment between protein pairs that combines the TM-score rotation matrix and Dynamic Programming (DP). The algorithm is approximately 4 times faster than CE and 20 times faster than DALI and SAL. On average, the resulting ...

Subject

Structural alignment

Protein Data Bank (RCSB PDB)

Protein Data Bank

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