Assemblathon 2: evaluating <i>de novo</i> methods of genome assembly in three vertebrate species

Bradnam, Keith; Fass, Joseph; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, İnanç; Boisvert, Sébastien; Chapman, Jarrod; Chapuis, Guillaume; Chikhi, Rayan; Chitsaz, Hamidreza; Chou, Wen‐Chi; Corbeil, Jacques; Del Fabbro, Cristian; Docking, Roderick; Durbin, Richard; Earl, Dent; Emrich, Scott; Fedotov, Pavel; A. Fonseca, Nuno; Ganapathy, Ganeshkumar; A. Gibbs, Richard; Gnerre, Sante; Godzaridis, Élénie; Goldstein, Steve; Haimel, Matthias; Hall, Giles; Haussler, David; Hiatt, Joseph; Ho, Isaac; T. Howard, Jason; Hunt, Martin; D. Jackman, Shaun; B. Jaffe, David; D. Jarvis, Erich; Jiang, Huaiyang; В. Казаков, С.; Kersey, Paul; O. Kitzman, Jacob; Knight, James; Koren, Sergey; Lam, Tak‐Wah; Lavenier, Dominique; Laviolette, François; Li, Yingrui; Li, Zhenyu; Liu, Binghang; Liu, Yue; Luo, Ruibang; MacCallum, Iain; D. MacManes, Matthew; Maillet, Nicolas; Melnikov, Sergey; Naquin, Delphine; Ning, Zemin; D. Otto, Thomas; Paten, Benedict; S. Paulo, Octávio; M. Phillippy, Adam; Pina‐Martins, Francisco; Place, Michael; Przybylski, Dariusz; Qin, Xiang; Qu, Carson; J. Ribeiro, Filipe; Richards, Stephen; S. Rokhsar, Daniel; Graham Ruby, J.; Scalabrin, Simone; C. Schatz, Michael; C. Schwartz, David; Sergushichev, Alexey; Sharpe, Ted; I. Shaw, Timothy; Shendure, Jay; Shi, Yujian; T. Simpson, Jared; Song, Henry; Tsarev, Fedor; Vezzi, Francesco; Vicedomini, Riccardo; Vieira, Bruno; Wang, Jun; C. Worley, Kim; Yin, Shuangye; Ming Yiu, Siu; Yuan, Jianying; Zhang, Guojie; Zhang, Hao; Zhou, Shiguo; Korf, Ian

doi:10.1186/2047-217x-2-10

Public

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Published in GigaScience • Jul 22, 2013

Authors:

Keith Bradnam

Joseph Fass

Anton Alexandrov

Abstract

BACKGROUND: The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are available, but they differ greatly in terms of their ...

Subject

Vertebrate

Genome

Computational biology

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