HexServer: an FFT-based protein docking server powered by graphics processors

Macindoe, Gary; Mavridis, Lazaros; Venkatraman, Vishwesh; Devignes, Marie‐Dominique; W. Ritchie, David

doi:10.1093/nar/gkq311

Public

HexServer: an FFT-based protein docking server powered by graphics processors

Published in Nucleic Acids Research • May 5, 2010

Authors:

Gary Macindoe

Lazaros Mavridis

Vishwesh Venkatraman

Abstract

HexServer (http://hexserver.loria.fr/) is the first Fourier transform (FFT)-based protein docking server to be powered by graphics processors. Using two graphics processors simultaneously, a typical 6D docking run takes approximately 15 s, which is up to two orders of magnitude faster than conventio...

Subject

Docking (animal)

Biology

Graphics

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