Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

J. Haas, Brian; L. Salzberg, Steven; Zhu, Wei; Pertea, Mihaela; Allen, Jonathan; Orvis, Joshua; White, Owen; Robin Buell, C.; R. Wortman, Jennifer

doi:10.1186/gb-2008-9-1-r7

Public

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Published in Genome biology • Jan 11, 2008

Authors:

Brian J. Haas

Steven L. Salzberg

Wei Zhu

Abstract

EVidenceModeler (EVM) is presented as an automated eukaryotic gene structure annotation tool that reports eukaryotic gene structures as a weighted consensus of all available evidence. EVM, when combined with the Program to Assemble Spliced Alignments (PASA), yields a comprehensive, configurable anno...

Subject

Biology

Human genetics

Annotation

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