SOAPdenovo-Trans: <i>de novo</i> transcriptome assembly with short RNA-Seq reads

Xie, Yinlong; Wu, Gengxiong; Tang, Jingbo; Luo, Ruibang; Patterson, Jordan; Liu, Shanlin; Huang, Weihua; He, Guangzhu; Gu, Shengchang; Li, Shengkang; Zhou, Xin; Lam, Tak‐Wah; Li, Yingrui; Xu, Xun; Ka‐Shu Wong, Gane; Wang, Jun

doi:10.1093/bioinformatics/btu077

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SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

Published in Bioinformatics • Feb 13, 2014

Authors:

Yinlong Xie

Gengxiong Wu

Jingbo Tang

Abstract

MOTIVATION: Transcriptome sequencing has long been the favored method for quickly and inexpensively obtaining a large number of gene sequences from an organism with no reference genome. Owing to the rapid increase in throughputs and decrease in costs of next- generation sequencing, RNA-Seq in partic...

Subject

Transcriptome

RNA-Seq

De novo transcriptome assembly

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