MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Li, Dinghua; Liu, Chi-Man; Luo, Ruibang; Sadakane, Kunihiko; Lam, Tak‐Wah

doi:10.1093/bioinformatics/btv033

Public

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Published in Bioinformatics • Jan 20, 2015

Authors:

Dinghua Li

Chi-Man Liu

Ruibang Luo

Abstract

Abstract Summary: MEGAHIT is a NGS de novo assembler for assembling large and complex metagenomics data in a time- and cost-efficient manner. It finished assembling a soil metagenomics dataset with 252 Gbps in 44.1 and 99.6 h on a single computing node with and without a graphics processing unit, re...

Subject

Contig

Metagenomics

De Bruijn graph

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