Roary: rapid large-scale prokaryote pan genome analysis

J. Page, Andrew; Cummins, Carla; Hunt, Martin; Wong, Vanessa; Reuter, Sandra; T. G. Holden, Matthew; Fookes, María; Falush, Daniel; A. Keane, Jacqueline; Parkhill, Julian

doi:10.1093/bioinformatics/btv421

Public

Roary: rapid large-scale prokaryote pan genome analysis

Published in Bioinformatics • Jul 20, 2015

Authors:

Andrew J. Page

Carla Cummins

Martin Hunt

Abstract

UNLABELLED: A typical prokaryote population sequencing study can now consist of hundreds or thousands of isolates. Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool that rapidly builds large-scale pan genomes, ide...

Subject

Prokaryote

Genome

Perl

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