Sambamba: fast processing of NGS alignment formats

Tarasov, Artem; J. Vilella, Albert; Cuppen, Edwin; J. Nijman, Isaäc; Prins, Pjotr

doi:10.1093/bioinformatics/btv098

Public

Sambamba: fast processing of NGS alignment formats

Published in Bioinformatics • Feb 19, 2015

Authors:

Artem Tarasov

Albert J. Vilella

Edwin Cuppen

Abstract

UNLABELLED: Sambamba is a high-performance robust tool and library for working with SAM, BAM and CRAM sequence alignment files; the most common file formats for aligned next generation sequencing data. Sambamba is a faster alternative to samtools that exploits multi-core processing and dramatically ...

Subject

Computer science

MIT License

Software

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