A framework for human microbiome research

A. Methé, Barbara; Nelson, Karen; Madupu, Ramana; Bihan, Monika; Busam, Dana; Scott Durkin, A.; Foster, Leslie; B. Goll, Johannes; Li, Kelvin; McCorrison, Jamison; Miller, Jason; Rogers, Yu-Hui; Sanka, Ravi; Singh, Indresh; G. Sutton, Granger; Thiagarajan, Mathangi; Torralba, Manolito; Pop, Mihai; Koren, Sergey; Liu, Bo; Sommer, Daniel; H. Creasy, Heather; Giglio, Michelle; O. Abolude, Olukemi; Arze, Cesar; L. Cantarel, Brandi; Crabtree, Jonathan; J. Davidovics, Noam; Felix, Victor; Jordan, Catherine; Mahurkar, Anup; Orvis, Joshua; Ravel, Jacques; M. Schriml, Lynn; R. White, James; White, Owen; Huttenhower, Curtis; Fah Sathirapongsasuti, J.; Segata, Nicola; Gevers, Dirk; M. Earl, Ashlee; G. FitzGerald, Michael; R. Wortman, Jennifer; Young, Sarah; Zeng, Qiandong; J. Alm, Eric; Alvarado, Lucia; Anderson, Scott; Arachchi, Harindra; Bloom, Toby; Ciulla, Dawn; Erlich, Rachel; Feldgarden, Michael; Fisher, Sheila; C. Friedrich, Dennis; Giannoukos, Georgia; M. Goldberg, Jonathan; Griggs, Allison; Gujja, Sharvari; J. Haas, Brian; A. Hepburn, Theresa; Howarth, Clinton; Huang, Katherine; Kells, Cristyn; Mehta, Teena; Nusbaum, Chad; Pearson, M.A.; Priest, Margaret; Russ, Carsten; Shenoy, Narmada; M. Sykes, Sean; Tabbaa, Diana; Wang, Zhengyuan; V. Ward, Doyle; Yandava, Chandri; Zucker, Jeremy; W. Birren, Bruce; F. Petrosino, Joseph; M. Muzny, Donna; C. Worley, Kim; Buhay, Christian; Ding, Yan; Dugan, Shannon; Holder, Michael; Jiang, Huaiyang; Joshi, Vandita; Kovar, Christie; L. Lee, Sandra; J. Lennon, Niall; Lewis, Lora; Liu, Yue; Newsham, Irene; Qin, Xiang; G. Reid, Jeffrey; Wilczek-Boney, Katarzyna; Wu, Yuan; Zhang, Lan; Zhu, Yiming; A. Gibbs, Richard; K. Highlander, Sarah; Abubucker, Sahar; Chinwalla, Asif; S. Fulton, Robert; Hallsworth-Pepin, Kymberlie; A. Lobos, Elizabeth; Magrini, Vincent; C. Martin, John; Mitreva, Makedonka; Sodergren, Erica; Wollam, Aye; L. Appelbaum, Elizabeth; Bhonagiri, Veena; Chen, Lei; W. Clifton, Sandra; D. Delehaunty, Kimberley; Deych, Elena; J. Dooling, David; N. Farmer, Candace; C. Fronick, Catrina; Fulton, Lucinda; Herter, Brandi; Kota, Karthik; R. Mardis, Elaine; A. Mihindukulasuriya, Kathie; Minx, Patrick; O'Laughlin, Michelle; Pohl, Craig; Tomlinson, Chad; Walker, Jason; C. Warren, Wesley; M. Wylie, Kristine; Wylie, Todd; Ye, Liang; Zhou, Yanjiao; M. Weinstock, George; K. Wilson, Richard; Versalovic, James; Gao, Hongyu; M. Aagaard, Kjersti; Allen‐Vercoe, Emma; L. Andersen, Gary; C. Armitage, Gary; Ayvaz, Tulin; A. Keitel, Wendy; C. Ross, Matthew; P. Youmans, Bonnie; C. Baker, Carl; Begg, Lisa; Belachew, Tsegahiwot; L. Campbell, Joseph; Deal, Carolyn; Di Francesco, Valentina; Giblin, Christina; Y. Giovanni, Maria; J. Blaser, Martin; Bonazzi, Vivien; Chhibba, Shaila; E. McEwen, Jean; L. Peterson, Jane; M. Proctor, Lita; A. Schloss, Jeffery; Wang, Lu; Wellington, Christopher; A. Wetterstrand, Kris; Brooks, Paul; A. Buck, Gregory; C. Rivera, Maria; U. Sheth, Nihar; R. Canon, Shane; Chain, Patrick; Lo, Chien‐Chi; Scholz, Matthew; C. Kyrpides, Nikos; Liolios, Konstantinos; M. Markowitz, Victor; Mavrommatis, Konstantinos; Pagani, I; A. Chen, I-Min; Chu, Ken; G Palaniappan, K; C. Clemente, José; Knight, Rob; Lozupone, Catherine; McDonald, Daniel; A. Cutting, Mary; Hamilton, Holli; Harris, Emily; Dwayne Lunsford, R.; McInnes, Pamela; C. Davis, Catherine; Z. DeSantis, Todd; E. Dewhirst, Floyd; Izard, Jacques; P. Lemon, Katherine; Michael Dunne, W.; A. Watson, Mark; C. Edgar, R.; M. Farrell, Ruth; R. Sharp, Richard; Faust, Karoline; Raes, Jeroen; A. Fodor, Anthony; J. Forney, Larry; Friedman, Jonathan; S. Smillie, Christopher; García, Nathalia; González, Antonio; Knights, Dan; E. Hoffmann, Diane; M. Huse, Susan; Jansson, Janet; A. Katancik, James; T. Kelley, Scott; Rodriguez-Mueller, Beltran; Kinder-Haake, Susan; B. King, Nicholas; H. Kong, Heidi; Koren, Omry; E. Ley, Ruth; S. La Rosa, Patricio; D. Shannon, William; M. Lewis, Cecil; Spicer, Paul; Madden, Tessa; Mannon, Peter; L. McGuire, Amy; M. Patel, Shital; Podar, Mircea; A. Vishnivetskaya, Tatiana; S. Pollard, Katherine; J. Sharpton, Thomas; Truty, Rebecca; Rho, Mina; Ye, Yuzhen; Rhodes, Rosamond; Riehle, Kevin; Akshay Sankar, P; D. Schloss, Patrick; M. Schubert, Alyxandria; M. Schmidt, Thomas; A. Simone, Gina; D. Sobel, Jack; J. Treangen, Todd; H. Badger, Jonathan; Yooseph, Shibu; ZOLOTH, LAURIE; Conlan, Sean; A. Segre, Julia

doi:10.1038/nature11209

Public

A framework for human microbiome research

Published in Nature • Jun 1, 2012

Authors:

Barbara A. Methé

Karen Nelson

Ramana Madupu

Abstract

A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The National Institutes of Health (NIH)-funded Human Microbiome Project Consortium has established a population-scale framework to develop metageno...

Subject

Microbiome

Human microbiome

Computational biology

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