HiCUP: pipeline for mapping and processing Hi-C data

Wingett, Steven; Ewels, Philip; Furlan-Magaril, Mayra; Nagano, Takashi; Schoenfelder, Stefan; Fraser, Peter; Andrews, Simon

doi:10.12688/f1000research.7334.1

Public

HiCUP: pipeline for mapping and processing Hi-C data

Published in F1000Research • Nov 20, 2015

Authors:

Steven Wingett

Philip Ewels

Mayra Furlan-Magaril

Abstract

HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experiments, which are techniques used to investigate three-dimensional genomic organisation. The pipeline maps data to a specified reference genome and removes artefacts that would otherwise hinder subsequen...

Subject

Pipeline (software)

Computer science

Open peer review

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