MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

S. Campbell, Michael; Law, Mei-Yee; Holt, Carson; C. Stein, Joshua; D. Moghe, Gaurav; E. Hufnagel, David; Lei, Jikai; Achawanantakun, Rujira; Jiao, Dian; J. Lawrence, Carolyn; Ware, Doreen; Shiu, Shin‐Han; L. Childs, Kevin; Sun, Yanni; Jiang, Ning; Yandell, Mark

doi:10.1104/pp.113.230144

Public

MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

Published in PLANT PHYSIOLOGY • Dec 4, 2013

Authors:

Michael S. Campbell

Mei-Yee Law

Carson Holt

Abstract

We have optimized and extended the widely used annotation engine MAKER in order to better support plant genome annotation efforts. New features include better parallelization for large repeat-rich plant genomes, noncoding RNA annotation capabilities, and support for pseudogene identification. We hav...

Subject

Arabidopsis

Annotation

Arabidopsis thaliana

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