SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Zeitouni, Bruno; Boeva, Valentina; Janoueix‐Lerosey, Isabelle; Loeillet, Sophie; Legoix-Né, Patricia; Nicolas, Alain; Delattre, Olivier; Barillot, Emmanuel

doi:10.1093/bioinformatics/btq293

Public

SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Published in Bioinformatics • Jul 16, 2010

Authors:

Bruno Zeitouni

Valentina Boeva

Isabelle Janoueix‐Lerosey

Abstract

SUMMARY: We present SVDetect, a program designed to identify genomic structural variations from paired-end and mate-pair next-generation sequencing data produced by the Illumina GA and ABI SOLiD platforms. Applying both sliding-window and clustering strategies, we use anomalously mapped read pairs p...

Subject

Sliding window protocol

Computer science

Visualization

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