Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

C. Durand, Neva; S. Shamim, Muhammad; Machol, Ido; S.P. Rao, Suhas; Huntley, Miriam; S. Lander, Eric; Lieberman Aiden, Erez

doi:10.1016/j.cels.2016.07.002

Public

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Published in Cell Systems • Jul 1, 2016

Authors:

Neva C. Durand

Muhammad S. Shamim

Ido Machol

Abstract

Hi-C experiments explore the 3D structure of the genome, generating terabases of data to create high-resolution contact maps. Here, we introduce Juicer, an open-source tool for analyzing terabase-scale Hi-C datasets. Juicer allows users without a computational background to transform raw sequence da...

Subject

Computer science

Visualization

Software

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