IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Narayanasamy, Shaman; Jarosz, Yohan; Muller, Emilie; Heintz‐Buschart, Anna; Herold, Malte; Kaysen, Anne; C. Laczny, Cédric; Pinel, Nicolás; May, Patrick; Wilmes, Paul

doi:10.1186/s13059-016-1116-8

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IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Published in Genome biology • Dec 1, 2016

Authors:

Shaman Narayanasamy

Yohan Jarosz

Emilie Muller

Abstract

Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and often result in sub-optimal data usage. Here we present IMP, a reproducible and modular pipeline for the integrated and reference-independent analysis of coupled metagenomic and metatranscriptomic data. IMP in...

Subject

Workflow

Metagenomics

Preprocessor

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