Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi

Fortin, Jean-Philippe; J. Triche, Timothy; D. Hansen, Kasper

doi:10.1093/bioinformatics/btw691

Public

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi

Published in Bioinformatics • Nov 4, 2016

Authors:

Jean-Philippe Fortin

Timothy J. Triche

Kasper D. Hansen

Abstract

Summary: The minfi package is widely used for analyzing Illumina DNA methylation array data. Here we describe modifications to the minfi package required to support the HumanMethylationEPIC ('EPIC') array from Illumina. We discuss methods for the joint analysis and normalization of data from the Hum...

Subject

Bioconductor

Normalization (sociology)

Preprocessor

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