KMC 3: counting and manipulating <i>k</i>-mer statistics

Kokot, Marek; Długosz, Maciej; Deorowicz, Sebastian

doi:10.1093/bioinformatics/btx304

Public

KMC 3: counting and manipulating k-mer statistics

Published in Bioinformatics • May 3, 2017

Authors:

Marek Kokot

Maciej Długosz

Sebastian Deorowicz

Abstract

SUMMARY: Counting all k -mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k -mer databases. Usefulness of the tools is shown on a few real problems. ...

Subject

Statistics

Computer science

Mathematics

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