KMC 3: counting and manipulating
                    <i>k</i>
                    -mer statistics

Kokot, Marek; Długosz, Maciej; Deorowicz, Sebastian

doi:10.1093/bioinformatics/btx304

Public

KMC 3: counting and manipulating k -mer statistics

Shared by NobleBlocks on May 4, 2017 • 12:00 AM UTC

Authors:

Marek Kokot

Maciej Długosz

Sebastian Deorowicz

Abstract

Abstract Summary Counting all k-mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k-mer databases. Usefulness of the tools is shown on a few real prob...

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