LocText: relation extraction of protein localizations to assist database curation

Miguel Cejuela, Juan; Vinchurkar, Shrikant; Goldberg, Tatyana; Sollepura Prabhu Shankar, Madhukar; Baghudana, Ashish; Bojchevski, Aleksandar; Uhlig, Carsten; Ofner, André; Raharja-Liu, Pandu; Juhl Jensen, Lars; Rost, Burkhard

doi:10.1186/s12859-018-2021-9

Public

LocText: relation extraction of protein localizations to assist database curation

Published in BMC Bioinformatics • Jan 17, 2018

Authors:

Juan Miguel Cejuela

Shrikant Vinchurkar

Tatyana Goldberg

Abstract

BACKGROUND: The subcellular localization of a protein is an important aspect of its function. However, the experimental annotation of locations is not even complete for well-studied model organisms. Text mining might aid database curators to add experimental annotations from the scientific literatur...

Subject

Computer science

Data curation

Database

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