FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

I. Garber, Arkadiy; H. Nealson, Kenneth; Okamoto, Akihiro; M. McAllister, Sean; S. Chan, Clara; A. Barco, Roman; Merino, Nancy

doi:10.3389/fmicb.2020.00037

Public

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

Published in Frontiers in Microbiology • Jan 31, 2020

Authors:

Arkadiy I. Garber

Kenneth H. Nealson

Akihiro Okamoto

Abstract

. Along with this database, we present FeGenie, a bioinformatics tool that accepts genome and metagenome assemblies as input and uses our comprehensive HMM database to annotate provided datasets with respect to iron-related genes and gene neighborhood. An important contribution of this tool is the e...

Subject

Metagenomics

Genome

Gene

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