Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates

A. Gladstone, Rebecca; W. Lo, Stephanie; Goater, Richard; Yeats, Corin; Taylor, Ben; Hadfield, James; A. Lees, John; J. Croucher, Nicholas; J. van Tonder, Andries; J. Bentley, Leon; Xiang Quah, Fu; J. Blaschke, Anne; L. Pershing, Nicole; L. Byington, Carrie; Veeraraghavan, Balaji; Hryniewicz, Waleria; Sigaúque, Betuel; L Ravikumar, K; Cristine Grassi Almeida, Samanta; J. Ochoa, Theresa; Ho, Pak‐Leung; du Plessis, Mignon; Ndlangisa, Kedibone; Cornick, Jennifer; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan; A. Madhi, Shabir; A. Hawkins, Paulina; J. Pollard, Andrew; Everett, Dean; Antonio, Martín; Dagan, Ron; P. Klugman, Keith; von Gottberg, Anne; J. Metcalf, Benjamin; Li, Yuan; Beall, Bernard; McGee, Lesley; F. Breiman, Robert; M. Aanensen, David; D. Bentley, Stephen

doi:10.1099/mgen.0.000357

Public

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates

Published in Microbial Genomics • May 1, 2020

Authors:

Rebecca A. Gladstone

Stephanie W. Lo

Richard Goater

Abstract

Knowledge of pneumococcal lineages, their geographic distribution and antibiotic resistance patterns, can give insights into global pneumococcal disease. We provide interactive bioinformatic outputs to explore such topics, aiming to increase dissemination of genomic insights to the wider community, ...

Subject

Phylogenetic tree

Biology

Phylogenetics

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