Using SPAdes De Novo Assembler

D. Prjibelski, Andrey; Antipov, Dmitry; Meleshko, Dmitry; Lapidus, Alla; Korobeynikov, Anton

doi:10.1002/cpbi.102

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Using SPAdes De Novo Assembler

Published in Current Protocols in Bioinformatics • Jun 1, 2020

Authors:

Andrey D. Prjibelski

Dmitry Antipov

Dmitry Meleshko

Abstract

SPAdes-St. Petersburg genome Assembler-was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic DNA sequencing. With time, the functionality of SPAdes was extended to enable assembly of IonTorrent data, as well as ...

Subject

Sequence assembly

Protocol (science)

Metagenomics

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