A genomic catalog of Earth’s microbiomes

Nayfach, Stephen; Roux, Simon; Seshadri, R.; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Páez-Espino, David; A. Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; B. K. Reddy, T.; Nielsen, Torben; Kirton, Edward; P. Faria, José; N. Edirisinghe, Janaka; S. Henry, Christopher; P. Jungbluth, Sean; Chivian, Dylan; Dehal, Paramvir; M. Wood‐Charlson, Elisha; P. Arkin, Adam; G. Tringe, Susannah; Visel, Axel; Abreu, Helena; G. Acinas, Silvia; Allen, Eric; A. Allen, Michelle; V. Alteio, Lauren; L. Andersen, Gary; M. B. Anesio, Alexandre; T. Attwood, Graeme; Avila‐Magaña, Viridiana; Badis, Yacine; V. Bailey, Jake; J. Baker, Brett; Baldrián, Petr; A. Barton, Hazel; A. C. Beck, David; D. Becraft, Eric; R. Beller, Harry; Michael Beman, J.; Bernier‐Latmani, Rizlan; D. Berry, Timothy; D. Bertagnolli, Anthony; Bertilsson, Stefan; Bhatnagar, Jennifer; T. Bird, Jordan; L. Blanchard, Jeffrey; E. Blumer‐Schuette, Sara; J. M. Bohannan, Brendan; A. Borton, Mikayla; Brady, Allyson; H. Brawley, Susan; Brodie, Juliet; D. Brown, Steven; R. Brum, Jennifer; Brune, Andreas; A. Bryant, Donald; Buchan, Alison; H. Buckley, Daniel; Buongiorno, Joy; Cadillo‐Quiroz, Hinsby; M. Caffrey, Sean; Campbell, Ashley; J. Campbell, Barbara; Carr, Stephanie; Carroll, JoLynn; Craig Cary, S.; M. Cates, Anna; Ann Cattolico, Rose; Cavicchioli, Ricardo; Chistoserdova, Ludmila; L. Coleman, Maureen; Constant, Philippe; M. Conway, Jonathan; P. Mac Cormack, Walter; A. Crowe, Sean; C. Crump, Byron; R. Currie, Cameron; Daly, Rebecca; M. DeAngelis, Kristen; J. Denef, Vincent; E. Denman, Stuart; Feleke Desta, Adey; M. Dionisi, Hebe; A. Dodsworth, Jeremy; Dombrowski, Nina; J. Donohue, Timothy; Dopson, Mark; Driscoll, Timothy; F. Dunfield, Peter; L. Dupont, Christopher; A. Dynarski, Katherine; P. Edgcomb, Virginia; A. Edwards, Elizabeth; S. Elshahed, Mostafa; Figueroa, Israel; E. Flood, Beverly; W. Fortney, Nathaniel; S. Fortunato, Caroline; Francis, Christopher; M. M. Gachon, Claire; L. Garcia, Sarahi; Consuelo Gazitúa, María; J. Gentry, Terry; Gerwick, Lena; Gharechahi, Javad; Girguis, Peter; M. Gladden, John; R. Gradoville, Mary; E. Grasby, Stephen; Gravuer, Kelly; L. Grettenberger, Christen; J. Gruninger, Robert; Guo, Jiarong; Y. Habteselassie, Mussie; Hallam, Steven; Hatzenpichler, Roland; Hausmann, Bela; C. Hazen, Terry; P. Hedlund, Brian; Henny, Cynthia; Herfort, Lydie; Hernandez, Maria; S. Hershey, Olivia; Hess, Matthias; B. Hollister, Emily; Hug, Laura; E. Hunt, Dana; Jansson, Janet; Jarett, Jessica; V. Kadnikov, Vitaly; N. Kelly, Charlene; M. Kelly, Robert; J. Kelly, William; A. Kerfeld, Cheryl; A. Kimbrel, Jeffrey; L. Klassen, Jonathan; T. Konstantinidis, Konstantinos; L. Lee, Laura; Li, Wen‐Jun; J. Loder, Andrew; Loy, Alexander; Lozada, Mariana; J. MacGregor, Barbara; Magnabosco, Cara; Maria da Silva, Aline; Michael L. McKay, R.; D. McMahon, Katherine; S. McSweeney, Christopher; Medina, Mónica; Meredith, Laura; E. Mizzi, Jessica; Möck, Thomas; Momper, Lily; Ann Moran, Mary; Morgan‐Lang, Connor; P. Moser, Duane; Muyzer, Gerard; D. Myrold, David; Nash, Maisie; Nesbø, Camilla; P. Neumann, Anthony; B. Neumann, Rebecca; R. Noguera, Daniel; R. Northen, Trent; M. Norton, Jeanette; Nowinski, Brent; Nüsslein, Klaus; O’Malley, Michelle; S. Oliveira, Rafael; Maia de Oliveira, Valéria; C. Onstott, T.; Osvatic, Jay; Ouyang, Yang; Pachiadaki, Maria; Parnell, Jacob; P. Partida‐Martínez, Laila; Peay, Kabir; A. Pelletier, Dale; Peng, Xuefeng; Pester, Michael; Pett‐Ridge, Jennifer; Peura, Sari; Pjevac, Petra; M. Plominsky, Alvaro; Poehlein, Anja; B. Pope, Phillip; V. Ravin, Nikolai; C. Redmond, Molly; A. Reiss, Rebecca; I. Rich, Virginia; Rinke, Christian; L. Mazza Rodrigues, Jorge; Rodriguez-Reillo, William; Rossmassler, Karen; Sackett, Joshua; Hosseini Salekdeh, Ghasem; R. Saleska, S.; Scarborough, Matthew; P. Schachtman, Daniel; W. Schadt, Christopher; Schrenk, Matthew; Sczyrba, Alexander; Sengupta, Aditi; Carlos Setúbal, João; Shade, Ashley; Sharp, Christine; H. Sherman, David; V. Shubenkova, О.; Natalia Sierra-Garcia, Isabel; L. Simister, Rachel; M. Simon, Holly; Sjöling, Sara; L. Slonczewski, Joan; Soares Correa de Souza, Rafael; R. Spear, John; Stegen, James; Stepanauskas, Ramūnas; J. Stewart, Frank; Suen, Garret; B. Sullivan, Matthew; Y. Sumner, D.; K. Swan, Brandon; D. Swingley, Wesley; Tarn, Jonathan; T. Taylor, Gordon; Teeling, Hanno; Tekere, Memory; Teske, Andreas; Thomas, Torsten; Thrash, Cameron; M. Tiedje, James; S. Ting, Claire; Tully, Benjamin; W. Tyson, Gene; Ulloa, Osvlado; L. Valentine, David; W. Van Goethem, Marc; S. VanderGheynst, Jean; J. Verbeke, Tobin; Vollmers, John; Vuillemin, Aurèle; B. Waldo, Nicholas; A. Walsh, David; C. Weimer, Bart; Whitman, Thea; W. J. J. van der Wielen, Paul; J. Wilkins, Michael; J. Williams, Timothy; J. Woodcroft, Ben; Woolet, Jamie; Wrighton, Kelly; Ye, Jun; B. Young, Erica; H. Youssef, Noha; Brian Yu, Feiqiao; I. Zemskaya, Т.; Ziels, Ryan; Woyke, Tanja; J. Mouncey, Nigel; Ivanova, Natalia; C. Kyrpides, Nikos; A. Eloe‐Fadrosh, Emiley

doi:10.1038/s41587-020-0718-6

Public

A genomic catalog of Earth’s microbiomes

Published in Nature Biotechnology • Nov 9, 2020

Authors:

Stephen Nayfach

Simon Roux

R. Seshadri

Abstract

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000 metagenomes collected from diverse habitats covering all of Earth's continents ...

Subject

Metagenomics

Biology

Microbiome

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