A global metagenomic map of urban microbiomes and antimicrobial resistance

Danko, David; Bezdan, Daniela; E. Afshin, Evan; Ahsanuddin, Sofia; Bhattacharya, Chandrima; Butler, Daniel; Rei Chng, Kern; Donnellan, Daisy; Hecht, Jochen; Jackson, Katelyn; Kuchin, Katerina; Karasikov, Mikhail; Lyons, Abigail; Mak, Lauren; Meleshko, Dmitry; Mustafa, Harun; Mutai, Beth; Y. Neches, Russell; Hui Qi Ng, Amanda; Nikolayeva, Olga; Nikolayeva, Tatyana; Png, Eileen; Ryon, Krista; L. Sánchez, Jorge; Shaaban, Heba; A. Sierra, Maria; Thomas, Dominique; Young, Ben; O. Abudayyeh, Omar; Alicea, Josue; Bhattacharyya, Malay; Blekhman, Ran; Castro‐Nallar, Eduardo; Cañas, A; D. Chatziefthimiou, Aspassia; W. Crawford, Robert; De Filippis, Francesca; Deng, Youping; Desnues, Christelle; Dias‐Neto, Emmanuel; Dybwad, Marius; Elhaik, Eran; Ercolini, Danilo; Frolova, Alina; Gankin, Dennis; S. Gootenberg, Jonathan; B. Graf, Alexandra; C. Green, David; Hajirasouliha, Iman; J. A. Hastings, Jaden; Hernandez, Mark; Iraola, Gregorio; Jang, Soojin; Kahles, André; J. Kelly, Frank; Knights, Kaymisha; C. Kyrpides, Nikos; P. Łabaj, Paweł; K. H. Lee, Patrick; H. Y. Leung, Marcus; O. Ljungdahl, Per; Mason-Buck, Gabriella; McGrath, Ken; Meydan, Cem; F. Mongodin, Emmanuel; Ozório Moraes, Milton; Nagarajan, Niranjan; Nieto‐Caballero, Marina; Noushmehr, Houtan; Oliveira, Manuela; Ossowski, Stephan; Osuolale, Olayinka; Özcan, Orhan; Páez-Espino, David; Rascovan, Nicolás; Richard, Hugues; Rätsch, Gunnar; M. Schriml, Lynn; Semmler, Torsten; Uğur Sezerman, Osman; Shi, Leming; Shi, Tieliu; Siam, Rania; Huu Song, Le; Suzuki, Haruo; Syndercombe Court, Denise; Tighe, Scott; Tong, Xinzhao; I. Udekwu, Klas; A. Ugalde, Juan; Valentine, Brandon; Vassilev, Dimitar; Vayndorf, Elena; P. Velavan, Thirumalaisamy; Wu, Jun; Mercedes Zambrano, María; Zhu, Jifeng; Zhu, Sibo; E. Mason, Christopher; Abdullah, Natasha; Abraao, Marcos; Adel, Amro; Afaq, Muhammad; Alquaddoomi, Faisal; Alam, Ireen; E. Albuquerque, Gabriela; Alexiev, Alex; Mohammed Ali, K.; Elena Alvarado-Arnez, Lucia; Aly, Sarh; Amachee, Jennifer; Galli de Amorim, María; Ampadu, Majelia; Al-Fath Amran, Muhammad; An, Nala; Andrew, Watson; Andrianjakarivony, Harilanto; Angelov, Michael; Antelo, Verónica; Aquino, Catharine; Aranguren‐Ibáñez, Álvaro; Araujo, Luiza; Francois Vasquez Arevalo, Hitler; M. G. Arevalo, J.; Arnan, Carme; Elena Alvarado-Arnez, Lucia; Arredondo, Fernanda; Arthur, Matthew; Asenjo, Freddy; Saw Aung, Thomas; Auvinet, Juliette; Aventin, Nuria; Ayaz, Sadaf; Baburyan, Silva; Bakere, Abd-Manaaf; Bakhl, Katrin; Fernanda Bartelli, Thais; Erdenetsetseg, Batdelger; Baudon, François; Becher, Kevin; Bello, Carla; Benchouaia, Médine; Benisty, Hannah; Benoiston, Anne‐Sophie; Benson, Joseph; Benítez, Diego; Bernardes, Juliana; Bertrand, Denis; Beurmann, Silvia; Bitard‐Feildel, Tristan; Bittner, Lucie; Black, Christina; Blanc, Guillaume; Blyther, Brittany; Bode, Toni; Boeri, Julia; Boldgiv, Bazartseren; Bolzli, Kevin; Bordigoni, Alexia; Borrelli, Ciro; Bouchard, Sonia; Bouly, Jean‐Pierre; Boyd, Alicia; Pereira Branco, Gabriela; Breschi, Alessandra; Brindefalk, Björn; Brion, Christian; C. Briones, Alan; Buczansla, Paulina; Burke, Catherine; Millie Burrell, A.; Butova, Alina; Buttar, Irvind; Bynoe, Jalia; Bönigk, Sven; O. Bøifot, Kari; Caballero, Hiram; Wen Cai, Xiao; Calderón, Dayana; Cantillo, Angela; Carbajo Carbajo, M.; Carbone, Alessandra; Cardenas, Anais; Carrillo-Castro, Katerine; Casalot, Laurie; Obredor Castro, S; V. Castro, Ana; Castro, Astred; Valeria Castro, Ana; Cawthorne, Simone; Cedillo, Jonathan; Chaker, Salama; Chalangal, Jasna; Chan, Allison; I. Chasapi, Anastasia; Chatziefthimiou, Starr; Ray Chaudhuri, Sreya; Keluth Chavan, Akash; Chavez, Francisco; Chem, Gregory; Chen, Xiaoqing; Chen, Michelle; Chen, Jenn‐Wei; Chernomoretz, Ariel; Chettouh, Allaeddine; Cheung, Daisy; Chicas, Diana; Chiu, Shirley; Choudhry, Hira; Chrispin, Carl; Ciaramella, Kianna; Alejandra Cifuentes, Erika; Cohen, Jake; A. Coil, David; Collin, Sylvie; Conger, Colleen; Conte, Romain; Corsi, Flavia; N. Cossio, Cecilia; Flávia D.V. Costa, Ana; Cuebas, Delisia; D’Alessandro, Bruno; Dahlhausen, Katherine; E. Darling, Aaron; Das, Pujita; B. Davenport, Lucinda; David, Laurent; R. Davidson, Natalie; Dayama, Gargi; Delmas, Stéphane; Deng, Chris; Dequeker, Chloé; Désert, Alexandre; Devi, Monika; Segato Dezem, Felipe; N. Dias, Clara; Ryan Donahoe, Timothy; Dorado, S.; Dorsey, LaShonda; A. Dotsenko, V.; Du, Steven; Dutan, Alexandra; A. Eady, Naya; A. Eisen, Jonathan; Elaskandrany, Miar; Epping, Lennard; Pablo Escalera-Antezana, Juan; L. Ettinger, Cassie; Faiz, Iqra; Fan, Luice; Farhat, Nadine; Faure, Emile; Fauzi, Fazlina; Feigin, Charlie; Felice, Skye; Pereira Ferreira, Laís; Figueroa, Gabriel; Fleiss, Aubin; Flores, Denisse; L. Velasco Flores, Jhovana; A. Fonseca, Marcos; Foox, Jonathan; Carlos Forero, Juan; Francis, Aaishah; French, Kelly; Fresia, Pablo; E. Friedman, Jacob; J. Fuentes, Jaime; Galipon, Josephine; Garcia, Mathilde; Garcia, Laura; García, Catalina; Geiger, Annie; M. Gerner, Samuel; L. Ghose, Sonia; Phương Giang, Đào; Giménez, Matías; Giovannelli, Donato; Githae, Dedan; Gkotzis, Spyridon; Godoy, Liliana; L. Goldman, Samantha; H. Gonnet, Gastón; Gonzalez, Juana; María Moreno González, Andrea; Gonzalez-Poblete, Camila; Gray, Andrew; Gregory, Tranette; Greselle, Charlotte; Guasco, Sophie; José Martínez Guerra, Juan; Gurianova, Nika; Haehr, Wolfgang; Halary, Sebastien; Hartkopf, Felix; J. A. Hastings, Jaden; Hawkins-Zafarnia, Arya; Hazlin Hazrin-Chong, Nur; J. N. Helfrich, Eric; Hell, Éva; Henry, Tamera; Hernández, Samuel; Hernández, Pilar; Hess-Homeier, David; Hittle, Lauren; Xuan Hoan, Nghiem; Holik, Aliaksei; Homma, Chiaki; Hoxie, Irene; Huber, Michael; Humphries, Elizabeth; Hyland, Stephanie; Hässig, A.; Häusler, Roland; Hüsser, Nathalie; A. Petit, Robert; Iderzorig, Badamnyambuu; Igarashi, Mizuki; B. Iqbal, Shaikh; Ishikawa, Shino; Ishizuka, Sakura; Islam, Sharah; Islam, Riham; Ito, Kohei; Ito, Sota; Ito, Takayuki; Ivanković, Tomislav; Iwashiro, Tomoki; Jackson, Sarah; Jacobs, JoAnn; J. James, Marisano; Jaubert, Marianne; Jerier, Marie-Laure; Jiminez, Esmeralda; Jinfessa, Ayantu; De Jong, Ymke; Woo Joo, Hyun; Jospin, Guilllaume; Kajita, Takema; Saadah Ahmad Kassim, Affifah; Kato, Nao; Kaur, Amrit; Kaur, Inderjit; S. G. Kehdy, Fernanda; S. Khadka, Vedbar; Khan, Shaira; Khavari, Mahshid; Ki, Michelle; Kim, Gina; Jun Kim, Hyung; Kim, Sangwan; J. King, Ryan; Knights, Kaymisha; KoLoMonaco, Giuseppe; Koag, Ellen; Kobko-Litskevitch, Nadezhda; Korshevniuk, Maryna; Kozhar, Michael; Krebs, Jonas; Kubota, Nanami; V. Kuklin, A.; S. Kumar, Sheelta; Kwong, Rachel; N. Kwong, Lawrence; Lafontaine, Ingrid; Lago, Juliana; Ying Lai, Tsoi; Laine, Élodie; Laiola, Manolo; Lakhneko, Olha; Lamba, Isha; de Lamotte, Gerardo; Lannes, Romain; de Lazzari, Eleonora; Leahy, Madeline; Lee, Hyunjung; Lee, Yunmi; Lee, Lucy; Lemaire, Vincent; Leong, Emily; H.Y. Leung, Marcus; Lewandowska, Dagmara; Li, Chenhao; Liang, Weijun; Lin, Moses; Lisboa, Priscilla; Litskevitch, Anna; Minwei Liu, Eric; Liu, Tracy; Arauco Livia, Mayra; Him Lo, Yui; Losim, Sonia; Loubens, Manon; Lu, Jennifer; Lykhenko, Olexandr; Lysakova, Simona; Mahmoud, Salah; Abdul Majid, Sara; Makogon, Natalka; Maldonado, Denisse; Mallari, Krizzy; M. Malta, Tathiane; Mamun, Maliha; Manoir, Dimitri; Marchandon, German; Marciniak, Natalia; Marinovic, Sonia; Marques, Brunna; Mathews, Nicole; Matsuzaki, Yuri; Matthys, Vincent; May, Madelyn; McComb, Elias; Meagher, Annabelle; Melamed, Adiell; Menary, Wayne; N. Mendez, Katterinne; Mendez, Ambar; Mauricette Mendy, Irène; Meng, Irene; Menon, Ajay; Menor, Mark; A. Meoded, Roy; Merino, Nancy; Meydan, Cem; Miah, Karishma; Mignotte, Mathilde; Miketic, Tanja; F. Miranda, Wilson; Mitsios, Athena; Miura, Ryusei; Miyake, Kunihiko; Moccia, Maria; Mohan, Natasha; Dlshad Mohsin, Mohammed; Moitra, Karobi; Moldes, Mauricio; Molina, Laura; Molinet, Jennifer; Molomjamts, Orgil-Erdene; Moniruzzaman, Eftar; Moon, Sookwon; de Oliveira Moraes, Isabelle; Moreno, Mario; Mosella, Maritza; W. Moser, Josef; Mozsary, Christopher; L. Muehlbauer, Amanda; Muner, Oasima; Munia, Muntaha; Munim, Naimah; Muscat, Maureen; Mustac, Tatjana; Muñoz, Cristina; Nadalin, Francesca; Naeem, Areeg; Nagy-Szakal, Dorottya; Nakagawa, Mayuko; Narce, Ashanti; Nasu, Masaki; González Navarrete, Irene; Naveed, Hiba; Nazario, Bryan; Rao Nedunuri, Narasimha; Neff, Thomas; Nesimi, Aida; Chiew Ng, Wan; Ng, Synti; Nguyen, Gloria; Ngwa, Elsy; Nicolas, Agier; Nicolas, Pierre; Nika, Abdollahi; Noorzi, Hosna; Nosrati, Avigdor; Noushmehr, Houtan; Noronha Nunes, Diana; O’Brien, Kathryn; B. O’Hara, Niamh; Oken, Gabriella; A. Olawoyin, Rantimi; Quilez Oliete, Javier; Olmeda, Kiara; Oluwadare, Tolulope; A. Oluwadare, Itunu; Ordioni, Nils; Orpilla, Jenessa; Orrego, Jacqueline; Ortega, Melissa; Osma, Princess; O. Osuolale, Israel; M. Osuolale, Oluwatosin; OTA, M; Oteri, Francesco; Oto, Yuya; Ounit, Rachid; Ouzounis, Christos; Pakrashi, Subhamitra; Paras, Rachel; Pardo-Este, Coral; Park, Youngja; Pastuszek, Paulina; Patel, Suraj; Pathmanathan, Jananan; Patrignani, Andrea; Toledano Pérez, Manuel; Peros, Ante; Persaud, Sabrina; Peters, Anisia; Phillips, Adam; Pineda, Lisbeth; Pool Pizzi, Melissa; Plaku, Alma; Plaku, Alketa; Pompa-Hogan, Brianna; Gabriela Portilla, María; Posada, Leonardo; Priestman, Max; Prithiviraj, Bharath; Priya, Sambhawa; Pugdeethosal, Phanthira; E. Pugh, Catherine; Pulatov, Benjamin; Pupiec, Angelika; Pyrshev, Kyrylo; Qing, Tao; Rahiel, Saher; Rahmatulloev, Savlatjon; Rajendran, Kannan; Ramcharan, Aneisa; Ramirez-Rojas, Adan; Rana, Shahryar; Ratnanandan, Prashanthi; D. 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Tsonev, Stefan; Tsuda, Kazutoshi; Tsurumaki, Takafumi; Tuz, Michelle; Tymoshenko, Yelyzaveta; Urgiles, Carmen; Usui, Mariko; Vacant, Sophie; Valentine, Brandon; Vann, Laura; Velter, Fabienne; Ventorino, Valeria; Vera-Wolf, Patricia; Vicedomini, Riccardo; A. Suarez-Villamil, Michael; Vincent, Sierra; Vivancos-Koopman, Renee; Wan, Andrew; X. Wang, Cindy; Warashina, Tomoro; Watanabe, Ayuki; Weekes, Samuel; Werner, Johannes; A. Westfall, David; H. Wieler, Lothar; D. Williams, Michelle; A. Wolf, Silver; Wong, Brian; Ling Wong, Yan; Wong, Tyler; Wright, Rasheena; Wunderlin, Tina; Yamanaka, Ryota; Yang, Jingcheng; Yano, Hirokazu; C. Yeh, George; Yemets, O.M.; V. Yeskova, Tetiana; Yoshikawa, Shusei; Zafar, Laraib; Zhang, Yang; Zhang, Shu; Zhang, Amy; Zheng, Yuanting; Zubenko, Stanislav

doi:10.1016/j.cell.2021.05.002

Public

A global metagenomic map of urban microbiomes and antimicrobial resistance

Published in Cell • May 26, 2021

Authors:

David Danko

Daniela Bezdan

Evan E. Afshin

Abstract

We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, an...

Subject

Metagenomics

Biology

Geospatial analysis

Research Assistant

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