Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr

Bharat, Amrita; Petkau, Aaron; P. Avery, Brent; C. Chen, Jessica; P. Folster, Jason; A. Carson, Carolee; Kearney, Ashley; Nadon, Céline; Mabon, Philip; Thiessen, Jeffrey; C. Alexander, David; Allen, Vanessa; El Bailey, Sameh; Békal, Sadjia; J. German, Greg; Haldane, David; Hoang, Linda; Chui, Linda; Minion, Jessica; Zahariadis, George; Van Domselaar, Gary; J. Reid‐Smith, Richard; R. Mulvey, Michael

doi:10.3390/microorganisms10020292

Public

Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr

Published in Microorganisms • Jan 26, 2022

Authors:

Amrita Bharat

Aaron Petkau

Brent P. Avery

Abstract

Whole genome sequencing (WGS) of Salmonella supports both molecular typing and detection of antimicrobial resistance (AMR). Here, we evaluated the correlation between phenotypic antimicrobial susceptibility testing (AST) and in silico prediction of AMR from WGS in Salmonella enterica (n = 1321) isol...

Subject

Salmonella enterica

Salmonella

Broth microdilution

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