The Pfam protein families database

FINN, ROBERT; Mistry, Jaina; Tate, John; Coggill, Penny; Heger, Andreas; E. Pollington, Joanne; Luke Gavin, O.; Gunasekaran, Prasad; Ceric, Goran; Forslund, Kristoffer; Holm, Liisa; L. L. Sonnhammer, Erik; R. Eddy, Sean; Bateman, Alex

doi:10.1093/nar/gkp985

Public

The Pfam protein families database

Published in Nucleic Acids Research • Nov 17, 2009

Authors:

ROBERT FINN

Jaina Mistry

John Tate

Abstract

Pfam is a widely used database of protein families and domains. This article describes a set of major updates that we have implemented in the latest release (version 24.0). The most important change is that we now use HMMER3, the latest version of the popular profile hidden Markov model package. Thi...

Subject

Biology

Computational biology

Database

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