LABKIT: Labeling and Segmentation Toolkit for Big Image Data

Arzt, Matthias; Deschamps, J.R.; Schmied, Christopher; Pietzsch, Tobias; Schmidt, Deborah; Tomančák, Pavel; Haase, Robert; Jug, Florian

doi:10.3389/fcomp.2022.777728

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LABKIT: Labeling and Segmentation Toolkit for Big Image Data

Published in Frontiers in Computer Science • Feb 10, 2022

Authors:

Matthias Arzt

J.R. Deschamps

Christopher Schmied

Abstract

We present LABKIT, a user-friendly Fiji plugin for the segmentation of microscopy image data. It offers easy to use manual and automated image segmentation routines that can be rapidly applied to single- and multi-channel images as well as to timelapse movies in 2D or 3D. LABKIT is specifically desi...

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Computer science

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