Global disparities in SARS-CoV-2 genomic surveillance

F. Brito, Anderson; Semenova, Elizaveta; Dudas, Gytis; W. Hassler, Gabriel; C. Kalinich, Chaney; U. G. Kraemer, Moritz; Ho, Joses; Tegally, Houriiyah; Githinji, George; N. Agoti, Charles; Matkin, Lucy; Whittaker, Charles; SARS-CoV-2 sequencing group, Bulgarian; Kantardjiev, Todor; Korsun, Nelly; Stoitsova, Savina; Dimitrova, Reneta; Trifonova, Ivelina; Dobrinov, Veselin; Grigorova, Lubomira; Stoykov, Ivan; Grigorova, Iliana; Gancheva, Anna; Diseases Genomics Network (Australia and New Zealand), Communicable; V. Jennison, Amy; E.X. Leong, Lex; Speers, David; Baird, Robert; Cooley, Louise; Kennedy, Karina; de Ligt, Joep; D . Rawlinson, William; J. van Hal, Sebastiaan; A. Williamson, Deborah; Impact Project, COVID-19; Singh, Risha; Nathaniel-Girdharrie, Sue-Min; Edghill, Lisa; Indar, Lisa; St. John, Joy; González-Escobar, Gabriel; Ramkisoon, Vernie; Brown Jordan, Arianne; Ramjag, Anushka; Mohammed, Nicholas; E. Foster, J.; Potter, Irad; Greenaway-Duberry, Sharra; George, Kenneth; Belmar-George, Sharon; Lee, John; Bisasor-McKenzie, Jacqueline; Astwood, Nadia; Sealey-Thomas, Rhonda; Laws, Hazel; Singh, Narine; Oyinloye, Ayoola; McMillan, Pearl; Hinds, Avery; Nandram, Naresh; Parasram, Roshan; Khan-Mohammed, Zobida; Charles, Shawn; Andrewin, Aisha; Barrie Johnson, D.; Keizer-Beache, Simone; Oura, Chris; G. Pybus, Oliver; R. Faria, Nuno; Stegger, Marc; Albertsen, Mads; Fomsgaard, Anders; Rasmussen, Morten; COVID-19 Genomic Surveillance Network, Fiocruz; Khouri, Ricardo; Gomes Naveca, Felipe; Gräf, Tiago; Miyajima, Fábio; Luz Wallau, Gabriel; Couto Motta, Fernando; core curation team, GISAID; Khare, Shruti; Freitas, Lucas; Schiavina, Constanza; Bach, Gunter; B. Schultz, Mark; Hong Chew, Yi; Makheja, Meera; Born, Priscila; Calegário, Gabriela; Romano, Sofia; Finello, Juan; Diallo, Amadou; Tze Chuen Lee, Raphael; Ni Xu, Ya; Yeo, Winston; Tiruvayipati, Suma; Yadahalli, Shilpa; for Genomic Surveillance in South Africa (NGS-SA), Network; Wilkinson, Eduan; Iranzadeh, Arash; Giandhari, Jennifer; Doolabh, Deelan; Pillay, Sureshnee; Ramphal, Upasana; Emmanuel San, James; Msomi, Nokukhanya; Mlisana, Koleka; von Gottberg, Anne; Walaza, Sibongile; Ismail, Arshad; Mohale, Thabo; Engelbrecht, Susan; U. van Zyl, Gert; Preiser, Wolfgang; Sigal, Alex; Hardie, Diana; Marais, Gert; Hsiao, Marvin; N.J. Korsman, Stephen; Davies, Mary‐Ann; Tyers, Lynn; Mudau, Innocent; York, Denis; Maslo, Caroline; Goedhals, Dominique; Abrahams, Shareef; Laguda-Akingba, Oluwakemi; Alisoltani, Arghavan; Godzik, Adam; Kurt Wibmer, Constantinos; P. Martin, Darren; Lessells, Richard; N. Bhiman, Jinal; Williamson, Carolyn; de Oliveira, Túlio; Chen, Chaoran; Nadeau, Sarah; du Plessis, Louis; Beckmann, Christiane; Redondo, Maurice; Kobel, Olivier; Noppen, Christoph; Seidel, Sophie; Santamaria de Souza, Noemie; Beerenwinkel, Niko; Topolsky, Ivan; Jablonski, Philipp; Fuhrmann, Lara; Dreifuss, David; Jahn, Katharina; Ferreira, Pedro; Posada-Céspedes, Susana; Beisel, Christian; Denes, Rebecca; Feldkamp, Mirjam; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Aquino, Catharine; Cabral de Gouvea, Andreia; Moccia, Maria; Grüter, Simon; Sykes, Timothy; Opitz, Lennart; White, Griffin; Neff, Laura; Popovic, Doris; Patrignani, Andrea; Tracy, Jay; Schlapbach, Ralph; T. Dermitzakis, Emmanouil; Harshman, Keith; Xénarios, Ioannis; Pégeot, Henri; Cerutti, Lorenzo; Penet, Deborah; Stadler, Tanja; P. Howden, Benjamin; Sintchenko, Vitali; S. Zuckerman, Neta; Mor, Orna; M. Blankenship, Heather; de Oliveira, Túlio; Tzer Pin Lin, Raymond; Mendonça Siqueira, Marilda; Cristina Resende, Paola; Tereza Ribeiro de Vasconcelos, Ana; Rosado Spilki, Fernando; Santana Aguiar, Renato; Alexiev, Ivailo; Ivanov, Ivan; Philipova, Ivva; V. F. Carrington, Christine; Sahadeo, Nikita; Branda, Ben; Gurry, Céline; Maurer‐Stroh, Sebastian; Naidoo, Dhamari; J. von Eije, Karin; D. Perkins, Mark; D. Van Kerkhove, Maria; C. Hill, Sarah; Cerdeira Sabino, Éster; G. Pybus, Oliver; Dye, Christopher; Bhatt, Samir; Flaxman, Seth; A. Suchard, Marc; D. Grubaugh, Nathan; Baele, Guy; R. Faria, Nuno

doi:10.1038/s41467-022-33713-y

Public

Global disparities in SARS-CoV-2 genomic surveillance

Published in Nature Communications • Nov 16, 2022

Authors:

Anderson F. Brito

Elizaveta Semenova

Gytis Dudas

Abstract

Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize molecular tests, treatments, vaccines, and guide public health responses. To investigate the global SARS-CoV-2 genomic surveillance, we used sequences shared via GISAID to estimate the impact of sequencing inte...

Subject

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)

Sars virus

Coronavirus disease 2019 (COVID-19)

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