Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

E. Carey, Megan; A. Dyson, Zoe; J. Ingle, Danielle; Amir, Afreenish; Kamweli Aworh, Mabel; Mm, Chattaway; Lip Chew, Ka; A. Crump, John; Feasey, Nicholas; P. Howden, Benjamin; H. Keddy, Karen; Maes, Mailis; M. Parry, Christopher; Van Puyvelde, Sandra; E. Webb, Hattie; O. Afolayan, Ayorinde; P. Alexander, Anna; Anandan, Shalini; R. Andrews, Jason; Ashton, Philip; Basnyat, Buddha; Bavdekar, Ashish; I. Bogoch, Isaac; D. Clemens, John; Esther da Silva, Késia; De, Anuradha; de Ligt, Joep; Díaz, Paula; Dolecek, Christiane; Dutta, Shanta; M. Ehlers, Marthie; Francois Watkins, Louise; O. Garrett, Denise; Godbole, Gauri; A. Gordon, Melita; R. Greenhill, Andrew; Griffin, Chelsey; Gupta, Madhu; S. Hendriksen, René; S. Heyderman, Robert; Hooda, Yogesh; Carlos Hormazábal, Juan; O. Ikhimiukor, Odion; Iqbal, Junaid; John Jacob, Jobin; Jenkins, Claire; Ramaiah Jinka, Dasaratha; John, Jacob; Kang, Gagandeep; Kanteh, Abdoulie; Kapil, Arti; Karkey, Abhilasha; Kariuki, Samuel; A. Kingsley, Robert; Mary Koshy, Roshine; Lauer, A.C.; M. Levine, Myron; Kadahalli Lingegowda, Ravikumar; P. Luby, Stephen; Mackenzie, Grant; Mashe, Tapfumanei; Msefula, Chisomo; Mutreja, Ankur; Nagaraj, Geetha; Nagaraj, Savitha; Nair, Satheesh; Naseri, Take; Nimarota-Brown, Susana; Njamkepo, Elisabeth; N. Okeke, Iruka; Putli Bai Perumal, Sulochana; J. Pollard, Andrew; Kumari Pragasam, Agila; Qadri, Firdausi; Naz Qamar, Farah; Rahman, Sadia; Rambocus, Savitra; A. Rasko, David; Ray, Pallab; M. Robins‐Browne, Roy; Rongsen‐Chandola, Temsunaro; Pierre Rutanga, Jean; K. Saha, Samir; Saha, Senjuti; Saigal, Karnika; Saiful Islam Sajib, Mohammad; C. Seidman, Jessica; Shakya, Jivan; Shamanna, Varun; Shastri, Jayanthi; Shrestha, Rajeev; Sia, Sonia; J. Sikorski, Michael; Singh, Ashita; M. Smith, Anthony; A. Tagg, Kaitlin; Tamrakar, Dipesh; Mohammad Tanmoy, Arif; Thomas, Maria; Thomas, M.; Thomsen, Robert; R. Thomson, Nicholas; Tupua, Siaosi; Vaidya, Krista; Valcanis, Mary; Veeraraghavan, Balaji; Weill, François‐Xavier; Wright, Jackie; Dougan, Gordon; Argimón, Silvia; A. Keane, Jacqueline; M. Aanensen, David; Baker, Stephen; E. Holt, Kathryn

doi:10.7554/elife.85867

Public

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

Published in eLife • Aug 8, 2023

Authors:

Megan E. Carey

Zoe A. Dyson

Danielle J. Ingle

Abstract

Background: serovar Typhi (Typhi) genomic data to inform public health action. This analysis, which marks 22 years since the publication of the first Typhi genome, represents the largest Typhi genome sequence collection to date (n=13,000). Methods: This is a meta-analysis of global genotype and anti...

Subject

Typhoid fever

Salmonella typhi

Biology

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