SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

J. Pardo-Palacios, Francisco; Arzalluz-Luque, Ángeles; Kondratova, Liudmyla; Salguero, Pedro; Mestre‐Tomás, Jorge; Amorín, Rocío; Estevan-Morió, Eva; Liu, Tianyuan; V. Nanni, Adalena; M. McIntyre, Lauren; Tseng, Elizabeth; Conesa, Ana

doi:10.1038/s41592-024-02229-2

Public

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

Published in Nature Methods • Mar 20, 2024

Authors:

Francisco J. Pardo-Palacios

Ángeles Arzalluz-Luque

Liudmyla Kondratova

Abstract

SQANTI3 is a tool designed for the quality control, curation and annotation of long-read transcript models obtained with third-generation sequencing technologies. Leveraging its annotation framework, SQANTI3 calculates quality descriptors of transcript models, junctions and transcript ends. With thi...

Subject

Identification (biology)

Computational biology

Gene isoform

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