The geospatial phylodynamics of SARS-CoV-2 in Nepal and clinical phenotype of long COVID during the Delta-Omicron waves

Wirth, Wytamma; N. Thomson, Tilda; Manandhar, Prajwol; Shrestha, Swastika; Napit, Rajindra; Dixit, Sameer; Shrestha, Gyanendra; R. Lane, Courtney; Gyanwali, Pradip; Pant, Suman; Kumar Rajbhandari, Sagar; Bhandari, Parmananda; Sharma Chalise, Bimal; Lal Das, Chuman; Kumar Yadav, Pranav; Thapa, Prakash; K. Mishra, Prasanna; Basnyat, Buddha; Karkey, Abhilasha; Maharjan, Nhukesh; Kovalenko, Ganna; Goodfellow, Ian; Baker, Stephen; J. Ioannidis, Lisa; Seemann, Torsten; J. Dunstan, Sarah; Pandey, Dipendra; Parajuli, Reshu; Prasad Koirala, Ram; Dhital, Raghu; Caws, Maxine

doi:10.1101/2025.07.24.25332179

Public

The geospatial phylodynamics of SARS-CoV-2 in Nepal and clinical phenotype of long COVID during the Delta-Omicron waves

Published in medRxiv • Jul 25, 2025

Authors:

Wytamma Wirth

Tilda N. Thomson

Prajwol Manandhar

Abstract

Abstract The COVID-19 pandemic exposed gaps in global emerging infectious disease preparedness, particularly for countries with high levels of economic migration, such as Nepal. The Epidemic Intelligence project analysed SARS-CoV-2 genomic and epidemiological data from 2,046 COVID-19 patients across...

Subject

Coronavirus disease 2019 (COVID-19)

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)

2019-20 coronavirus outbreak

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