NobleBlocks

Japan Fisheries Research and Education Agency

funderYokohama, Japan

Research output, citation impact, and the most-cited recent papers from Japan Fisheries Research and Education Agency (Japan). Aggregated across the NobleBlocks index of 300M+ scholarly works.

Total works
10.4K
Citations
496.9K
h-index
191
i10-index
10.8K
Also known as
Fisheries Research AgencyJapan Fisheries Research and Education Agency国立研究開発法人水産研究・教育機構水産研究・教育機構

Top-cited papers from Japan Fisheries Research and Education Agency

Global Carbon Budget 2020
Pierre Friedlingstein, Michael O’Sullivan, Matthew W. Jones, Robbie M. Andrew +4 more
2020· Earth system science data2.5Kdoi:10.5194/essd-12-3269-2020

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions andtheir redistribution among the atmosphere, ocean, and terrestrial biospherein a changing climate – the “global carbon budget” – is important tobetter understand the global carbon cycle, support the development ofclimate policies, and project future climate change. Here we describe andsynthesize data sets and methodology to quantify the five major componentsof the global carbon budget and their uncertainties. Fossil CO2emissions (EFOS) are based on energy statistics and cement productiondata, while emissions from land-use change (ELUC), mainlydeforestation, are based on land use and land-use change data andbookkeeping models. Atmospheric CO2 concentration is measured directlyand its growth rate (GATM) is computed from the annual changes inconcentration. The ocean CO2 sink (SOCEAN) and terrestrialCO2 sink (SLAND) are estimated with global process modelsconstrained by observations. The resulting carbon budget imbalance(BIM), the difference between the estimated total emissions and theestimated changes in the atmosphere, ocean, and terrestrial biosphere, is ameasure of imperfect data and understanding of the contemporary carboncycle. All uncertainties are reported as ±1σ. For the lastdecade available (2010–2019), EFOS was 9.6 ± 0.5 GtC yr−1 excluding the cement carbonation sink (9.4 ± 0.5 GtC yr−1 when the cement carbonation sink is included), andELUC was 1.6 ± 0.7 GtC yr−1. For the same decade, GATM was 5.1 ± 0.02 GtC yr−1 (2.4 ± 0.01 ppm yr−1), SOCEAN 2.5 ± 0.6 GtC yr−1, and SLAND 3.4 ± 0.9 GtC yr−1, with a budgetimbalance BIM of −0.1 GtC yr−1 indicating a near balance betweenestimated sources and sinks over the last decade. For the year 2019 alone, thegrowth in EFOS was only about 0.1 % with fossil emissions increasingto 9.9 ± 0.5 GtC yr−1 excluding the cement carbonation sink (9.7 ± 0.5 GtC yr−1 when cement carbonation sink is included), and ELUC was 1.8 ± 0.7 GtC yr−1, for total anthropogenic CO2 emissions of 11.5 ± 0.9 GtC yr−1 (42.2 ± 3.3 GtCO2). Also for 2019, GATM was5.4 ± 0.2 GtC yr−1 (2.5 ± 0.1 ppm yr−1), SOCEANwas 2.6 ± 0.6 GtC yr−1, and SLAND was 3.1 ± 1.2 GtC yr−1, with a BIM of 0.3 GtC. The global atmospheric CO2concentration reached 409.85 ± 0.1 ppm averaged over 2019. Preliminarydata for 2020, accounting for the COVID-19-induced changes in emissions,suggest a decrease in EFOS relative to 2019 of about −7 % (medianestimate) based on individual estimates from four studies of −6 %, −7 %,−7 % (−3 % to −11 %), and −13 %. Overall, the mean and trend in thecomponents of the global carbon budget are consistently estimated over theperiod 1959–2019, but discrepancies of up to 1 GtC yr−1 persist for therepresentation of semi-decadal variability in CO2 fluxes. Comparison ofestimates from diverse approaches and observations shows (1) no consensusin the mean and trend in land-use change emissions over the last decade, (2)a persistent low agreement between the different methods on the magnitude ofthe land CO2 flux in the northern extra-tropics, and (3) an apparentdiscrepancy between the different methods for the ocean sink outside thetropics, particularly in the Southern Ocean. This living data updatedocuments changes in the methods and data sets used in this new globalcarbon budget and the progress in understanding of the global carbon cyclecompared with previous publications of this data set (Friedlingstein et al.,2019; Le Quéré et al., 2018b, a, 2016, 2015b, a, 2014,2013). The data presented in this work are available at https://doi.org/10.18160/gcp-2020 (Friedlingstein et al., 2020).

Global Carbon Budget 2022
Pierre Friedlingstein, Michael O’Sullivan, Matthew W. Jones, Robbie M. Andrew +4 more
2022· Earth system science data1.8Kdoi:10.5194/essd-14-4811-2022

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions andtheir redistribution among the atmosphere, ocean, and terrestrial biospherein a changing climate is critical to better understand the global carboncycle, support the development of climate policies, and project futureclimate change. Here we describe and synthesize data sets and methodologies toquantify the five major components of the global carbon budget and theiruncertainties. Fossil CO2 emissions (EFOS) are based on energystatistics and cement production data, while emissions from land-use change(ELUC), mainly deforestation, are based on land use and land-use changedata and bookkeeping models. Atmospheric CO2 concentration is measureddirectly, and its growth rate (GATM) is computed from the annualchanges in concentration. The ocean CO2 sink (SOCEAN) is estimatedwith global ocean biogeochemistry models and observation-baseddata products. The terrestrial CO2 sink (SLAND) is estimated withdynamic global vegetation models. The resulting carbon budget imbalance(BIM), the difference between the estimated total emissions and theestimated changes in the atmosphere, ocean, and terrestrial biosphere, is ameasure of imperfect data and understanding of the contemporary carboncycle. All uncertainties are reported as ±1σ. For the year 2021, EFOS increased by 5.1 % relative to 2020, withfossil emissions at 10.1 ± 0.5 GtC yr−1 (9.9 ± 0.5 GtC yr−1 when the cement carbonation sink is included), and ELUC was 1.1 ± 0.7 GtC yr−1, for a total anthropogenic CO2 emission(including the cement carbonation sink) of 10.9 ± 0.8 GtC yr−1(40.0 ± 2.9 GtCO2). Also, for 2021, GATM was 5.2 ± 0.2 GtC yr−1 (2.5 ± 0.1 ppm yr−1), SOCEAN was 2.9 ± 0.4 GtC yr−1, and SLAND was 3.5 ± 0.9 GtC yr−1, with aBIM of −0.6 GtC yr−1 (i.e. the total estimated sources were too low orsinks were too high). The global atmospheric CO2 concentration averaged over2021 reached 414.71 ± 0.1 ppm. Preliminary data for 2022 suggest anincrease in EFOS relative to 2021 of +1.0 % (0.1 % to 1.9 %)globally and atmospheric CO2 concentration reaching 417.2 ppm, morethan 50 % above pre-industrial levels (around 278 ppm). Overall, the meanand trend in the components of the global carbon budget are consistentlyestimated over the period 1959–2021, but discrepancies of up to 1 GtC yr−1 persist for the representation of annual to semi-decadalvariability in CO2 fluxes. Comparison of estimates from multipleapproaches and observations shows (1) a persistent large uncertainty in theestimate of land-use change emissions, (2) a low agreement between thedifferent methods on the magnitude of the land CO2 flux in the northernextratropics, and (3) a discrepancy between the different methods on thestrength of the ocean sink over the last decade. This living data updatedocuments changes in the methods and data sets used in this new globalcarbon budget and the progress in understanding of the global carbon cyclecompared with previous publications of this data set. The data presented inthis work are available at https://doi.org/10.18160/GCP-2022 (Friedlingstein et al., 2022b).

Global Carbon Budget 2019
Pierre Friedlingstein, Matthew W. Jones, Michael O’Sullivan, Robbie M. Andrew +4 more
2019· Earth system science data1.7Kdoi:10.5194/essd-11-1783-2019

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions andtheir redistribution among the atmosphere, ocean, and terrestrial biosphere– the “global carbon budget” – is important to better understand theglobal carbon cycle, support the development of climate policies, andproject future climate change. Here we describe data sets and methodology toquantify the five major components of the global carbon budget and theiruncertainties. Fossil CO2 emissions (EFF) are based on energystatistics and cement production data, while emissions from land use change(ELUC), mainly deforestation, are based on land use and land use changedata and bookkeeping models. Atmospheric CO2 concentration is measureddirectly and its growth rate (GATM) is computed from the annual changesin concentration. The ocean CO2 sink (SOCEAN) and terrestrialCO2 sink (SLAND) are estimated with global process modelsconstrained by observations. The resulting carbon budget imbalance(BIM), the difference between the estimated total emissions and theestimated changes in the atmosphere, ocean, and terrestrial biosphere, is ameasure of imperfect data and understanding of the contemporary carboncycle. All uncertainties are reported as ±1σ. For the lastdecade available (2009–2018), EFF was 9.5±0.5 GtC yr−1,ELUC 1.5±0.7 GtC yr−1, GATM 4.9±0.02 GtC yr−1 (2.3±0.01 ppm yr−1), SOCEAN 2.5±0.6 GtC yr−1, and SLAND 3.2±0.6 GtC yr−1, with a budgetimbalance BIM of 0.4 GtC yr−1 indicating overestimated emissionsand/or underestimated sinks. For the year 2018 alone, the growth in EFF wasabout 2.1 % and fossil emissions increased to 10.0±0.5 GtC yr−1, reaching 10 GtC yr−1 for the first time in history,ELUC was 1.5±0.7 GtC yr−1, for total anthropogenicCO2 emissions of 11.5±0.9 GtC yr−1 (42.5±3.3 GtCO2). Also for 2018, GATM was 5.1±0.2 GtC yr−1 (2.4±0.1 ppm yr−1), SOCEAN was 2.6±0.6 GtC yr−1, and SLAND was 3.5±0.7 GtC yr−1, with a BIM of 0.3 GtC. The global atmospheric CO2 concentration reached 407.38±0.1 ppm averaged over 2018. For 2019, preliminary data for the first 6–10 months indicate a reduced growth in EFF of +0.6 % (range of−0.2 % to 1.5 %) based on national emissions projections for China, theUSA, the EU, and India and projections of gross domestic product correctedfor recent changes in the carbon intensity of the economy for the rest ofthe world. Overall, the mean and trend in the five components of the globalcarbon budget are consistently estimated over the period 1959–2018, butdiscrepancies of up to 1 GtC yr−1 persist for the representation ofsemi-decadal variability in CO2 fluxes. A detailed comparison amongindividual estimates and the introduction of a broad range of observationsshows (1) no consensus in the mean and trend in land use change emissionsover the last decade, (2) a persistent low agreement between the differentmethods on the magnitude of the land CO2 flux in the northernextra-tropics, and (3) an apparent underestimation of the CO2variability by ocean models outside the tropics. This living data updatedocuments changes in the methods and data sets used in this new globalcarbon budget and the progress in understanding of the global carbon cyclecompared with previous publications of this data set (Le Quéré etal., 2018a, b, 2016, 2015a, b, 2014, 2013). The data generated bythis work are available at https://doi.org/10.18160/gcp-2019 (Friedlingsteinet al., 2019).

Global Carbon Budget 2018
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch +4 more
2018· Earth system science data1.7Kdoi:10.5194/essd-10-2141-2018

Abstract. Accurate assessment of anthropogenic carbon dioxide(CO2) emissions and their redistribution among the atmosphere,ocean, and terrestrial biosphere – the “global carbon budget” – isimportant to better understand the global carbon cycle, support thedevelopment of climate policies, and project future climate change. Here wedescribe data sets and methodology to quantify the five major components ofthe global carbon budget and their uncertainties. Fossil CO2emissions (EFF) are based on energy statistics and cementproduction data, while emissions from land use and land-use change (ELUC),mainly deforestation, are based on land use and land-use change data andbookkeeping models. Atmospheric CO2 concentration is measureddirectly and its growth rate (GATM) is computed from the annualchanges in concentration. The ocean CO2 sink (SOCEAN)and terrestrial CO2 sink (SLAND) are estimated withglobal process models constrained by observations. The resulting carbonbudget imbalance (BIM), the difference between the estimatedtotal emissions and the estimated changes in the atmosphere, ocean, andterrestrial biosphere, is a measure of imperfect data and understanding ofthe contemporary carbon cycle. All uncertainties are reported as ±1σ. For the last decade available (2008–2017), EFF was9.4±0.5 GtC yr−1, ELUC 1.5±0.7 GtC yr−1, GATM 4.7±0.02 GtC yr−1,SOCEAN 2.4±0.5 GtC yr−1, and SLAND 3.2±0.8 GtC yr−1, with a budget imbalance BIM of0.5 GtC yr−1 indicating overestimated emissions and/or underestimatedsinks. For the year 2017 alone, the growth in EFF was about 1.6 %and emissions increased to 9.9±0.5 GtC yr−1. Also for 2017,ELUC was 1.4±0.7 GtC yr−1, GATM was 4.6±0.2 GtC yr−1, SOCEAN was 2.5±0.5 GtC yr−1, and SLAND was 3.8±0.8 GtC yr−1,with a BIM of 0.3 GtC. The global atmosphericCO2 concentration reached 405.0±0.1 ppm averaged over 2017.For 2018, preliminary data for the first 6–9 months indicate a renewedgrowth in EFF of +2.7 % (range of 1.8 % to 3.7 %) basedon national emission projections for China, the US, the EU, and India andprojections of gross domestic product corrected for recent changes in thecarbon intensity of the economy for the rest of the world. The analysispresented here shows that the mean and trend in the five components of theglobal carbon budget are consistently estimated over the period of 1959–2017,but discrepancies of up to 1 GtC yr−1 persist for the representationof semi-decadal variability in CO2 fluxes. A detailed comparisonamong individual estimates and the introduction of a broad range ofobservations show (1) no consensus in the mean and trend in land-use changeemissions, (2) a persistent low agreement among the different methods onthe magnitude of the land CO2 flux in the northern extra-tropics,and (3) an apparent underestimation of the CO2 variability by oceanmodels, originating outside the tropics. This living data update documentschanges in the methods and data sets used in this new global carbon budgetand the progress in understanding the global carbon cycle compared withprevious publications of this data set (Le Quéré et al., 2018, 2016,2015a, b, 2014, 2013). All results presented here can be downloaded fromhttps://doi.org/10.18160/GCP-2018.

Global Carbon Budget 2021
Pierre Friedlingstein, Matthew W. Jones, Michael O’Sullivan, Robbie M. Andrew +4 more
2022· Earth system science data1.6Kdoi:10.5194/essd-14-1917-2022

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions andtheir redistribution among the atmosphere, ocean, and terrestrial biospherein a changing climate is critical to better understand the global carboncycle, support the development of climate policies, and project futureclimate change. Here we describe and synthesize datasets and methodology toquantify the five major components of the global carbon budget and theiruncertainties. Fossil CO2 emissions (EFOS) are based on energystatistics and cement production data, while emissions from land-use change(ELUC), mainly deforestation, are based on land use and land-use changedata and bookkeeping models. Atmospheric CO2 concentration is measureddirectly, and its growth rate (GATM) is computed from the annualchanges in concentration. The ocean CO2 sink (SOCEAN) is estimatedwith global ocean biogeochemistry models and observation-baseddata products. The terrestrial CO2 sink (SLAND) is estimated withdynamic global vegetation models. The resulting carbon budget imbalance(BIM), the difference between the estimated total emissions and theestimated changes in the atmosphere, ocean, and terrestrial biosphere, is ameasure of imperfect data and understanding of the contemporary carboncycle. All uncertainties are reported as ±1σ. For the firsttime, an approach is shown to reconcile the difference in our ELUCestimate with the one from national greenhouse gas inventories, supportingthe assessment of collective countries' climate progress. For the year 2020, EFOS declined by 5.4 % relative to 2019, withfossil emissions at 9.5 ± 0.5 GtC yr−1 (9.3 ± 0.5 GtC yr−1 when the cement carbonation sink is included), and ELUC was 0.9 ± 0.7 GtC yr−1, for a total anthropogenic CO2 emission of10.2 ± 0.8 GtC yr−1 (37.4 ± 2.9 GtCO2). Also, for2020, GATM was 5.0 ± 0.2 GtC yr−1 (2.4 ± 0.1 ppm yr−1), SOCEAN was 3.0 ± 0.4 GtC yr−1, and SLANDwas 2.9 ± 1 GtC yr−1, with a BIM of −0.8 GtC yr−1. Theglobal atmospheric CO2 concentration averaged over 2020 reached 412.45 ± 0.1 ppm. Preliminary data for 2021 suggest a rebound in EFOSrelative to 2020 of +4.8 % (4.2 % to 5.4 %) globally. Overall, the mean and trend in the components of the global carbon budgetare consistently estimated over the period 1959–2020, but discrepancies ofup to 1 GtC yr−1 persist for the representation of annual tosemi-decadal variability in CO2 fluxes. Comparison of estimates frommultiple approaches and observations shows (1) a persistent largeuncertainty in the estimate of land-use changes emissions, (2) a lowagreement between the different methods on the magnitude of the landCO2 flux in the northern extra-tropics, and (3) a discrepancy betweenthe different methods on the strength of the ocean sink over the lastdecade. This living data update documents changes in the methods and datasets used in this new global carbon budget and the progress in understandingof the global carbon cycle compared with previous publications of this dataset (Friedlingstein et al., 2020, 2019; LeQuéré et al., 2018b, a, 2016, 2015b, a, 2014, 2013). Thedata presented in this work are available at https://doi.org/10.18160/gcp-2021 (Friedlingstein et al., 2021).

Global Carbon Budget 2016
Corinne Le Quéré, Robbie M. Andrew, Josep G. Canadell, Stephen Sitch +4 more
2016· Earth system science data1.1Kdoi:10.5194/essd-8-605-2016

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere – the “global carbon budget” – is important to better understand the global carbon cycle, support the development of climate policies, and project future climate change. Here we describe data sets and methodology to quantify all major components of the global carbon budget, including their uncertainties, based on the combination of a range of data, algorithms, statistics, and model estimates and their interpretation by a broad scientific community. We discuss changes compared to previous estimates and consistency within and among components, alongside methodology and data limitations. CO2 emissions from fossil fuels and industry (EFF) are based on energy statistics and cement production data, respectively, while emissions from land-use change (ELUC), mainly deforestation, are based on combined evidence from land-cover change data, fire activity associated with deforestation, and models. The global atmospheric CO2 concentration is measured directly and its rate of growth (GATM) is computed from the annual changes in concentration. The mean ocean CO2 sink (SOCEAN) is based on observations from the 1990s, while the annual anomalies and trends are estimated with ocean models. The variability in SOCEAN is evaluated with data products based on surveys of ocean CO2 measurements. The global residual terrestrial CO2 sink (SLAND) is estimated by the difference of the other terms of the global carbon budget and compared to results of independent dynamic global vegetation models. We compare the mean land and ocean fluxes and their variability to estimates from three atmospheric inverse methods for three broad latitude bands. All uncertainties are reported as ±1σ, reflecting the current capacity to characterise the annual estimates of each component of the global carbon budget. For the last decade available (2006–2015), EFF was 9.3 ± 0.5 GtC yr−1, ELUC 1.0 ± 0.5 GtC yr−1, GATM 4.5 ± 0.1 GtC yr−1, SOCEAN 2.6 ± 0.5 GtC yr−1, and SLAND 3.1 ± 0.9 GtC yr−1. For year 2015 alone, the growth in EFF was approximately zero and emissions remained at 9.9 ± 0.5 GtC yr−1, showing a slowdown in growth of these emissions compared to the average growth of 1.8 % yr−1 that took place during 2006–2015. Also, for 2015, ELUC was 1.3 ± 0.5 GtC yr−1, GATM was 6.3 ± 0.2 GtC yr−1, SOCEAN was 3.0 ± 0.5 GtC yr−1, and SLAND was 1.9 ± 0.9 GtC yr−1. GATM was higher in 2015 compared to the past decade (2006–2015), reflecting a smaller SLAND for that year. The global atmospheric CO2 concentration reached 399.4 ± 0.1 ppm averaged over 2015. For 2016, preliminary data indicate the continuation of low growth in EFF with +0.2 % (range of −1.0 to +1.8 %) based on national emissions projections for China and USA, and projections of gross domestic product corrected for recent changes in the carbon intensity of the economy for the rest of the world. In spite of the low growth of EFF in 2016, the growth rate in atmospheric CO2 concentration is expected to be relatively high because of the persistence of the smaller residual terrestrial sink (SLAND) in response to El Niño conditions of 2015–2016. From this projection of EFF and assumed constant ELUC for 2016, cumulative emissions of CO2 will reach 565 ± 55 GtC (2075 ± 205 GtCO2) for 1870–2016, about 75 % from EFF and 25 % from ELUC. This living data update documents changes in the methods and data sets used in this new carbon budget compared with previous publications of this data set (Le Quéré et al., 2015b, a, 2014, 2013). All observations presented here can be downloaded from the Carbon Dioxide Information Analysis Center (doi:10.3334/CDIAC/GCP_2016).

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam +4 more
2014· PLoS Biology1.1Kdoi:10.1371/journal.pbio.1001889

Microbial ecology is plagued by problems of an abstract nature. Cell sizes are so small and population sizes so large that both are virtually incomprehensible. Niches are so far from our everyday experience as to make their very definition elusive. Organisms that may be abundant and critical to our survival are little understood, seldom described and/or cultured, and sometimes yet to be even seen. One way to confront these problems is to use data of an even more abstract nature: molecular sequence data. Massive environmental nucleic acid sequencing, such as metagenomics or metatranscriptomics, promises functional analysis of microbial communities as a whole, without prior knowledge of which organisms are in the environment or exactly how they are interacting. But sequence-based ecological studies nearly always use a comparative approach, and that requires relevant reference sequences, which are an extremely limited resource when it comes to microbial eukaryotes [1]. In practice, this means sequence databases need to be populated with enormous quantities of data for which we have some certainties about the source. Most important is the taxonomic identity of the organism from which a sequence is derived and as much functional identification of the encoded proteins as possible. In an ideal world, such information would be available as a large set of complete, well-curated, and annotated genomes for all the major organisms from the environment in question. Reality substantially diverges from this ideal, but at least for bacterial molecular ecology, there is a database consisting of thousands of complete genomes from a wide range of taxa, supplemented by a phylogeny-driven approach to diversifying genomics [2]. For eukaryotes, the number of available genomes is far, far fewer, and we have relied much more heavily on random growth of sequence databases [3],[4], raising the question as to whether this is fit for purpose.

Synthesis of iron fertilization experiments: From the Iron Age in the Age of Enlightenment
H. J. W. de Baar, Philip W. Boyd, Kenneth H. Coale, Michael R. Landry +4 more
2005· Journal of Geophysical Research Atmospheres978doi:10.1029/2004jc002601

Comparison of eight iron experiments shows that maximum Chl a , the maximum DIC removal, and the overall DIC/Fe efficiency all scale inversely with depth of the wind mixed layer (WML) defining the light environment. Moreover, lateral patch dilution, sea surface irradiance, temperature, and grazing play additional roles. The Southern Ocean experiments were most influenced by very deep WMLs. In contrast, light conditions were most favorable during SEEDS and SERIES as well as during IronEx‐2. The two extreme experiments, EisenEx and SEEDS, can be linked via EisenEx bottle incubations with shallower simulated WML depth. Large diatoms always benefit the most from Fe addition, where a remarkably small group of thriving diatom species is dominated by universal response of Pseudo ‐ nitzschia spp. Significant response of these moderate (10–30 μm), medium (30–60 μm), and large (>60 μm) diatoms is consistent with growth physiology determined for single species in natural seawater. The minimum level of “dissolved” Fe (filtrate < 0.2 μm) maintained during an experiment determines the dominant diatom size class. However, this is further complicated by continuous transfer of original truly dissolved reduced Fe(II) into the colloidal pool, which may constitute some 75% of the “dissolved” pool. Depth integration of carbon inventory changes partly compensates the adverse effects of a deep WML due to its greater integration depths, decreasing the differences in responses between the eight experiments. About half of depth‐integrated overall primary productivity is reflected in a decrease of DIC. The overall C/Fe efficiency of DIC uptake is DIC/Fe ∼ 5600 for all eight experiments. The increase of particulate organic carbon is about a quarter of the primary production, suggesting food web losses for the other three quarters. Replenishment of DIC by air/sea exchange tends to be a minor few percent of primary CO 2 fixation but will continue well after observations have stopped. Export of carbon into deeper waters is difficult to assess and is until now firmly proven and quite modest in only two experiments.

ON THE ACID DIGESTION METHOD FOR THE DETERMINATION OF CHROMIC OXIDE AS AN INDEX SUBSTANCE IN THE STUDY OF DIGESTIBILITY OF FISH FEED
Atsushi Furukawa, Hiroko TSUKAHARA
1966· NIPPON SUISAN GAKKAISHI898doi:10.2331/suisan.32.502

Numerous aspects of the wet acidic digestion procedure for the assay of chromic acid in a small amount of feed and excreta were examined to study the digestibility of feed by marine fishes; these examined were the spectral absorption curves of solutions prepared by the wet acid digestion of chromic oxide (Fig. 1), the stability of chromic acid solution obtained (Tables 1, 2), the effects of the amount of perchloric acid added (Table 2) and the wavelength to pre-pare the concentration-optical density curve (Fig. 2). The results of the present work showed that the following procedures were adequate for the study of digestibility. Weigh 50-100mg sample containing 1-3mg chromic oxide, wrap in a piece of filter paper and transfer to a dry 100ml Kjeldahl flask. Add 5ml of concentrated nitric acid in such a manner that it will wash down the particles adhered on the inside of the flask and allow to stand for a short period. Heat flask over a micro-electric heater which has the holes in the asbestos board covered so as to allow more heat to come in contact with the flasks. Allow the sample to digest until white precipitate is obtained (for about 20 minutes). When black particles adhere to the neck or side of the flask, wash them down by turning the flask 180°. Turn off the heater, cool the flask and 3ml perchloric acid to the digestion mixture and then reheat until green colour changes to yellow, orange or red. The reversal change in colour frequently occurs if the flasks are cooled just after the change in colour from green to yellow, because of the insufficient oxidation of the content. Therefore, the extension of digestion for 10 minutes is necessary after the colour change. Cool slightly and add about 50ml distilled water. Cool to room temperature and make up to 100ml in a volumetric flask with distilled water. Allow to stand for a few minutes to precipitate inor-ganic material. Transfer solution gently from the volumetric flask to a colorimetric tube, and read optical density at 350mμ against distilled water. The standard curve obtained by the wet acid digestion technique is expressed by the following equation;, Y=0.2089X+0.0032, where Y is the optical density at 350mμ, and X is the chromic oxide content of the sample (mg/100ml).

The future of food from the sea
Christopher Costello, Ling Cao, Stefan Gelcich, Miguel Ángel Cisneros‐Mata +4 more
2020· Nature850doi:10.1038/s41586-020-2616-y

Global food demand is rising, and serious questions remain about whether supply can increase sustainably1. Land-based expansion is possible but may exacerbate climate change and biodiversity loss, and compromise the delivery of other ecosystem services2–6. As food from the sea represents only 17% of the current production of edible meat, we ask how much food we can expect the ocean to sustainably produce by 2050. Here we examine the main food-producing sectors in the ocean—wild fisheries, finfish mariculture and bivalve mariculture—to estimate ‘sustainable supply curves’ that account for ecological, economic, regulatory and technological constraints. We overlay these supply curves with demand scenarios to estimate future seafood production. We find that under our estimated demand shifts and supply scenarios (which account for policy reform and technology improvements), edible food from the sea could increase by 21–44 million tonnes by 2050, a 36–74% increase compared to current yields. This represents 12–25% of the estimated increase in all meat needed to feed 9.8 billion people by 2050. Increases in all three sectors are likely, but are most pronounced for mariculture. Whether these production potentials are realized sustainably will depend on factors such as policy reforms, technological innovation and the extent of future shifts in demand. Modelled supply curves show that, with policy reform and technological innovation, the production of food from the sea may increase sustainably, perhaps supplying 25% of the increase in demand for meat products by 2050.

Effective fisheries management instrumental in improving fish stock status
Ray Hilborn, Ricardo O. Amoroso, Christopher M. Anderson, Julia K. Baum +4 more
2020· Proceedings of the National Academy of Sciences803doi:10.1073/pnas.1909726116

Marine fish stocks are an important part of the world food system and are particularly important for many of the poorest people of the world. Most existing analyses suggest overfishing is increasing, and there is widespread concern that fish stocks are decreasing throughout most of the world. We assembled trends in abundance and harvest rate of stocks that are scientifically assessed, constituting half of the reported global marine fish catch. For these stocks, on average, abundance is increasing and is at proposed target levels. Compared with regions that are intensively managed, regions with less-developed fisheries management have, on average, 3-fold greater harvest rates and half the abundance as assessed stocks. Available evidence suggests that the regions without assessments of abundance have little fisheries management, and stocks are in poor shape. Increased application of area-appropriate fisheries science recommendations and management tools are still needed for sustaining fisheries in places where they are lacking.

Global Carbon Budget 2015
Corinne Le Quéré, R. Moriarty, Robbie M. Andrew, Josep G. Canadell +4 more
2015· Earth system science data757doi:10.5194/essd-7-349-2015

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere is important to better understand the global carbon cycle, support the development of climate policies, and project future climate change. Here we describe data sets and a methodology to quantify all major components of the global carbon budget, including their uncertainties, based on the combination of a range of data, algorithms, statistics, and model estimates and their interpretation by a broad scientific community. We discuss changes compared to previous estimates as well as consistency within and among components, alongside methodology and data limitations. CO2 emissions from fossil fuels and industry (EFF) are based on energy statistics and cement production data, while emissions from land-use change (ELUC), mainly deforestation, are based on combined evidence from land-cover-change data, fire activity associated with deforestation, and models. The global atmospheric CO2 concentration is measured directly and its rate of growth (GATM) is computed from the annual changes in concentration. The mean ocean CO2 sink (SOCEAN) is based on observations from the 1990s, while the annual anomalies and trends are estimated with ocean models. The variability in SOCEAN is evaluated with data products based on surveys of ocean CO2 measurements. The global residual terrestrial CO2 sink (SLAND) is estimated by the difference of the other terms of the global carbon budget and compared to results of independent dynamic global vegetation models forced by observed climate, CO2, and land-cover change (some including nitrogen–carbon interactions). We compare the mean land and ocean fluxes and their variability to estimates from three atmospheric inverse methods for three broad latitude bands. All uncertainties are reported as ±1σ, reflecting the current capacity to characterise the annual estimates of each component of the global carbon budget. For the last decade available (2005–2014), EFF was 9.0 ± 0.5 GtC yr−1, ELUC was 0.9 ± 0.5 GtC yr−1, GATM was 4.4 ± 0.1 GtC yr−1, SOCEAN was 2.6 ± 0.5 GtC yr−1, and SLAND was 3.0 ± 0.8 GtC yr−1. For the year 2014 alone, EFF grew to 9.8 ± 0.5 GtC yr−1, 0.6 % above 2013, continuing the growth trend in these emissions, albeit at a slower rate compared to the average growth of 2.2 % yr−1 that took place during 2005–2014. Also, for 2014, ELUC was 1.1 ± 0.5 GtC yr−1, GATM was 3.9 ± 0.2 GtC yr−1, SOCEAN was 2.9 ± 0.5 GtC yr−1, and SLAND was 4.1 ± 0.9 GtC yr−1. GATM was lower in 2014 compared to the past decade (2005–2014), reflecting a larger SLAND for that year. The global atmospheric CO2 concentration reached 397.15 ± 0.10 ppm averaged over 2014. For 2015, preliminary data indicate that the growth in EFF will be near or slightly below zero, with a projection of −0.6 [range of −1.6 to +0.5] %, based on national emissions projections for China and the USA, and projections of gross domestic product corrected for recent changes in the carbon intensity of the global economy for the rest of the world. From this projection of EFF and assumed constant ELUC for 2015, cumulative emissions of CO2 will reach about 555 ± 55 GtC (2035 ± 205 GtCO2) for 1870–2015, about 75 % from EFF and 25 % from ELUC. This living data update documents changes in the methods and data sets used in this new carbon budget compared with previous publications of this data set (Le Quéré et al., 2015, 2014, 2013). All observations presented here can be downloaded from the Carbon Dioxide Information Analysis Center (doi:10.3334/CDIAC/GCP_2015).

Global carbon budget 2014
Corinne Le Quéré, R. Moriarty, Robbie M. Andrew, Glen P. Peters +4 more
2015· Earth system science data733doi:10.5194/essd-7-47-2015

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere is important to better understand the global carbon cycle, support the development of climate policies, and project future climate change. Here we describe data sets and a methodology to quantify all major components of the global carbon budget, including their uncertainties, based on the combination of a range of data, algorithms, statistics, and model estimates and their interpretation by a broad scientific community. We discuss changes compared to previous estimates, consistency within and among components, alongside methodology and data limitations. CO2 emissions from fossil fuel combustion and cement production (EFF) are based on energy statistics and cement production data, respectively, while emissions from land-use change (ELUC), mainly deforestation, are based on combined evidence from land-cover-change data, fire activity associated with deforestation, and models. The global atmospheric CO2 concentration is measured directly and its rate of growth (GATM) is computed from the annual changes in concentration. The mean ocean CO2 sink (SOCEAN) is based on observations from the 1990s, while the annual anomalies and trends are estimated with ocean models. The variability in SOCEAN is evaluated with data products based on surveys of ocean CO2 measurements. The global residual terrestrial CO2 sink (SLAND) is estimated by the difference of the other terms of the global carbon budget and compared to results of independent dynamic global vegetation models forced by observed climate, CO2, and land-cover-change (some including nitrogen–carbon interactions). We compare the mean land and ocean fluxes and their variability to estimates from three atmospheric inverse methods for three broad latitude bands. All uncertainties are reported as ±1σ, reflecting the current capacity to characterise the annual estimates of each component of the global carbon budget. For the last decade available (2004–2013), EFF was 8.9 ± 0.4 GtC yr−1, ELUC 0.9 ± 0.5 GtC yr−1, GATM 4.3 ± 0.1 GtC yr−1, SOCEAN 2.6 ± 0.5 GtC yr−1, and SLAND 2.9 ± 0.8 GtC yr−1. For year 2013 alone, EFF grew to 9.9 ± 0.5 GtC yr−1, 2.3% above 2012, continuing the growth trend in these emissions, ELUC was 0.9 ± 0.5 GtC yr−1, GATM was 5.4 ± 0.2 GtC yr−1, SOCEAN was 2.9 ± 0.5 GtC yr−1, and SLAND was 2.5 ± 0.9 GtC yr−1. GATM was high in 2013, reflecting a steady increase in EFF and smaller and opposite changes between SOCEAN and SLAND compared to the past decade (2004–2013). The global atmospheric CO2 concentration reached 395.31 ± 0.10 ppm averaged over 2013. We estimate that EFF will increase by 2.5% (1.3–3.5%) to 10.1 ± 0.6 GtC in 2014 (37.0 ± 2.2 GtCO2 yr−1), 65% above emissions in 1990, based on projections of world gross domestic product and recent changes in the carbon intensity of the global economy. From this projection of EFF and assumed constant ELUC for 2014, cumulative emissions of CO2 will reach about 545 ± 55 GtC (2000 ± 200 GtCO2) for 1870–2014, about 75% from EFF and 25% from ELUC. This paper documents changes in the methods and data sets used in this new carbon budget compared with previous publications of this living data set (Le Quéré et al., 2013, 2014). All observations presented here can be downloaded from the Carbon Dioxide Information Analysis Center (doi:10.3334/CDIAC/GCP_2014).

A multi-decade record of high-quality <i>f</i> CO <sub>2</sub> data in version 3 of the Surface Ocean CO <sub>2</sub> Atlas (SOCAT)
Dorothée C. E. Bakker, Benjamin Pfeil, Camilla S. Landa, Nicolas Metzl +4 more
2016· Earth system science data711doi:10.5194/essd-8-383-2016

Abstract. The Surface Ocean CO2 Atlas (SOCAT) is a synthesis of quality-controlled fCO2 (fugacity of carbon dioxide) values for the global surface oceans and coastal seas with regular updates. Version 3 of SOCAT has 14.7 million fCO2 values from 3646 data sets covering the years 1957 to 2014. This latest version has an additional 4.6 million fCO2 values relative to version 2 and extends the record from 2011 to 2014. Version 3 also significantly increases the data availability for 2005 to 2013. SOCAT has an average of approximately 1.2 million surface water fCO2 values per year for the years 2006 to 2012. Quality and documentation of the data has improved. A new feature is the data set quality control (QC) flag of E for data from alternative sensors and platforms. The accuracy of surface water fCO2 has been defined for all data set QC flags. Automated range checking has been carried out for all data sets during their upload into SOCAT. The upgrade of the interactive Data Set Viewer (previously known as the Cruise Data Viewer) allows better interrogation of the SOCAT data collection and rapid creation of high-quality figures for scientific presentations. Automated data upload has been launched for version 4 and will enable more frequent SOCAT releases in the future. High-profile scientific applications of SOCAT include quantification of the ocean sink for atmospheric carbon dioxide and its long-term variation, detection of ocean acidification, as well as evaluation of coupled-climate and ocean-only biogeochemical models. Users of SOCAT data products are urged to acknowledge the contribution of data providers, as stated in the SOCAT Fair Data Use Statement. This ESSD (Earth System Science Data) "living data" publication documents the methods and data sets used for the assembly of this new version of the SOCAT data collection and compares these with those used for earlier versions of the data collection (Pfeil et al., 2013; Sabine et al., 2013; Bakker et al., 2014). Individual data set files, included in the synthesis product, can be downloaded here: doi:10.1594/PANGAEA.849770. The gridded products are available here: doi:10.3334/CDIAC/OTG.SOCAT_V3_GRID.

A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)
Takashi Kamiya, Wataru Kai, Satoshi Tasumi, Ayumi Oka +4 more
2012· PLoS Genetics636doi:10.1371/journal.pgen.1002798

Heterogametic sex chromosomes have evolved independently in various lineages of vertebrates. Such sex chromosome pairs often contain nonrecombining regions, with one of the chromosomes harboring a master sex-determining (SD) gene. It is hypothesized that these sex chromosomes evolved from a pair of autosomes that diverged after acquiring the SD gene. By linkage and association mapping of the SD locus in fugu (Takifugu rubripes), we show that a SNP (C/G) in the anti-Müllerian hormone receptor type II (Amhr2) gene is the only polymorphism associated with phenotypic sex. This SNP changes an amino acid (His/Asp384) in the kinase domain. While females are homozygous (His/His384), males are heterozygous. Sex in fugu is most likely determined by a combination of the two alleles of Amhr2. Consistent with this model, the medaka hotei mutant carrying a substitution in the kinase domain of Amhr2 causes a female phenotype. The association of the Amhr2 SNP with phenotypic sex is conserved in two other species of Takifugu but not in Tetraodon. The fugu SD locus shows no sign of recombination suppression between X and Y chromosomes. Thus, fugu sex chromosomes represent an unusual example of proto-sex chromosomes. Such undifferentiated X-Y chromosomes may be more common in vertebrates than previously thought.

A Mesoscale Iron Enrichment in the Western Subarctic Pacific Induces a Large Centric Diatom Bloom
Atsushi Tsuda, Shigenobu Takeda, Hiroaki Saito, Jun Nishioka +4 more
2003· Science540doi:10.1126/science.1082000

We have performed an in situ test of the iron limitation hypothesis in the subarctic North Pacific Ocean. A single enrichment of dissolved iron caused a large increase in phytoplankton standing stock and decreases in macronutrients and dissolved carbon dioxide. The dominant phytoplankton species shifted after the iron addition from pennate diatoms to a centric diatom, Chaetoceros debilis, that showed a very high growth rate, 2.6 doublings per day. We conclude that the bioavailability of iron regulates the magnitude of the phytoplankton biomass and the key phytoplankton species that determine the biogeochemical sensitivity to iron supply of high-nitrate, low-chlorophyll waters.

Global estimates of shark catches using trade records from commercial markets
Shelley Clarke, Murdoch K. McAllister, E.J. Milner‐Gulland, G.P. Kirkwood +4 more
2006· Ecology Letters527doi:10.1111/j.1461-0248.2006.00968.x

Despite growing concerns about overexploitation of sharks, lack of accurate, species-specific harvest data often hampers quantitative stock assessment. In such cases, trade studies can provide insights into exploitation unavailable from traditional monitoring. We applied Bayesian statistical methods to trade data in combination with genetic identification to estimate by species, the annual number of globally traded shark fins, the most commercially valuable product from a group of species often unrecorded in harvest statistics. Our results provide the first fishery-independent estimate of the scale of shark catches worldwide and indicate that shark biomass in the fin trade is three to four times higher than shark catch figures reported in the only global data base. Comparison of our estimates to approximated stock assessment reference points for one of the most commonly traded species, blue shark, suggests that current trade volumes in numbers of sharks are close to or possibly exceeding the maximum sustainable yield levels.

First human-caused extinction of a cetacean species?
Samuel T. Turvey, Robert L. Pitman, Barbara L. Taylor, Jay Barlow +4 more
2007· Biology Letters525doi:10.1098/rsbl.2007.0292

The Yangtze River dolphin or baiji (Lipotes vexillifer), an obligate freshwater odontocete known only from the middle-lower Yangtze River system and neighbouring Qiantang River in eastern China, has long been recognized as one of the world's rarest and most threatened mammal species. The status of the baiji has not been investigated since the late 1990s, when the surviving population was estimated to be as low as 13 individuals. An intensive six-week multi-vessel visual and acoustic survey carried out in November-December 2006, covering the entire historical range of the baiji in the main Yangtze channel, failed to find any evidence that the species survives. We are forced to conclude that the baiji is now likely to be extinct, probably due to unsustainable by-catch in local fisheries. This represents the first global extinction of a large vertebrate for over 50 years, only the fourth disappearance of an entire mammal family since AD 1500, and the first cetacean species to be driven to extinction by human activity. Immediate and extreme measures may be necessary to prevent the extinction of other endangered cetaceans, including the sympatric Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis).

Foxl2 Up-Regulates Aromatase Gene Transcription in a Female-Specific Manner by Binding to the Promoter as Well as Interacting with Ad4 Binding Protein/Steroidogenic Factor 1
De-Shou Wang, Tohru Kobayashi, Lin-Yan Zhou, Bindhu Paul‐Prasanth +4 more
2006· Molecular Endocrinology506doi:10.1210/me.2006-0248

Increasing evidence suggests the crucial role of estrogen in ovarian differentiation of nonmammalian vertebrates including fish. The present study has investigated the plausible role of Foxl2 in ovarian differentiation through transcriptional regulation of aromatase gene, using monosex fry of tilapia. Foxl2 expression is sexually dimorphic, like Cyp19a1, colocalizing with Cyp19a1 and Ad4BP/SF-1 in the stromal cells and interstitial cells in gonads of normal XX and sex-reversed XY fish, before the occurrence of morphological sex differentiation. Under in vitro conditions, Foxl2 binds to the sequence ACAAATA in the promoter region of the Cyp19a1 gene directly through its forkhead domain and activates the transcription of Cyp19a1 with its C terminus. Foxl2 can also interact through the forkhead domain with the ligand-binding domain of Ad4BP/SF-1 to form a heterodimer and enhance the Ad4BP/SF-1 mediated Cyp19a1 transcription. Disruption of endogenous Foxl2 in XX tilapia by overexpression of its dominant negative mutant (M3) induces varying degrees of testicular development with occasional sex reversal from ovary to testis. Such fish display reduced expression of Cyp19a1 as well as a drop in the serum levels of 17beta-estradiol and 11-ketotestosterone. Although the XY fish with wild-type tilapia Foxl2 (tFoxl2) overexpression never exhibited a complete sex reversal, there were significant structural changes, such as tissue degeneration, somatic cell proliferation, and induction of aromatase, with increased serum levels of 17beta-estradiol and 11-ketotestosterone. Altogether, these results suggest that Foxl2 plays a decisive role in the ovarian differentiation of the Nile tilapia by regulating aromatase expression and possibly the entire steroidogenic pathway.

Tissue Preservation and Total DNA Extraction form Fish Stored at Ambient Temperature Using Buffers Containing High Concentration of Urea
Takashi Asahida, Takanori Kobayashi, Kenji Saitoh, Ichiro Nakayama
1996· Fisheries Science479doi:10.2331/fishsci.62.727

We have developed a high concentration urea containing buffer (TNES-Urea: 6 or 8M urea; 10mM Tris-HCl, pH 7.5; 125mM NaCl; 10mM EDTA; 1% SDS) for DNA extraction by modifying the cell lysis buffer for DNA isolation, and we found this buffer is suitable for long-term preservation of tissue samples from fish at ambient temperatures and for DNA extraction from fish that are rich in cellular endonucleases. Tissue samples from the Japanese flounder Paralichthys olivaceus and Atlantic herring Clupea harengus were preserved for periods ranging from 1 month to 3 years and for the Atlantic herring transported from Sweden to Japan in TNES-Urea buffer at ambient temperature (10-36°C). The total DNA for each fish was extracted from the muscle or liver tissue which had been preserved for periods ranging from 1 month to 3 years. The DNA yield was 0.5-2.6 μg of total DNA/mg tissue. All DNA from preserved tissues was suitable for DNA analyses, e. g. Polymerase Chain Reaction (PCR) technique, Southern blot analysis and Random amplified polymorphic DNA (RAPD) analysis. The TNES-Urea buffer provides a convenient method of tissue preservation and DNA extraction and offers an alternative to previous methods which require protocols that are restrictive in some field settings.